3kot: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{STRUCTURE_3kot|  PDB=3kot  |  SCENE=  }}
-===Structure of the Citrobacter freundii effector binding domain containing three amino acid substitutions: T103V, S221A and Y264F===
-{{ABSTRACT_PUBMED_20594961}}
-==Function==
+==Structure of the Citrobacter freundii effector binding domain containing three amino acid substitutions: T103V, S221A and Y264F==
-[[http://www.uniprot.org/uniprot/AMPR_CITFR AMPR_CITFR]] Regulates the expression of the beta-lactamase gene. Represses cephalosporinase (AmpC) in the presence of beta-lactams and induces it in the absence of them.
+<StructureSection load='3kot' size='340' side='right'caption='[[3kot]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3kot]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Citrobacter_freundii Citrobacter freundii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KOT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KOT FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kot FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kot OCA], [https://pdbe.org/3kot PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kot RCSB], [https://www.ebi.ac.uk/pdbsum/3kot PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kot ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/AMPR_CITFR AMPR_CITFR] Regulates the expression of the beta-lactamase gene. Represses cephalosporinase (AmpC) in the presence of beta-lactams and induces it in the absence of them.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ko/3kot_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kot ConSurf].
+<div style="clear:both"></div>
-==About this Structure==
+==See Also==
-[[3kot]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Citrobacter_freundii Citrobacter freundii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KOT OCA].
+*[[Transcriptional activator 3D structures|Transcriptional activator 3D structures]]
+__TOC__
-==Reference==
+</StructureSection>
-<ref group="xtra">PMID:020594961</ref><references group="xtra"/><references/>
 [[Category: Citrobacter freundii]]
-[[Category: Balcewich, M D.]]
+[[Category: Large Structures]]
-[[Category: Mark, B L.]]
+[[Category: Balcewich MD]]
-[[Category: Activator]]
+[[Category: Mark BL]]
-[[Category: Alpha-beta-sandwich]]
-[[Category: Dna-binding]]
-[[Category: Transcription]]
-[[Category: Transcription regulation]]