3iy8: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:3iy8.png|left|200px]]
-<!--
+==Leishmania tarentolae Mitonchondrial Ribosome small subunit==
-The line below this paragraph, containing "STRUCTURE_3iy8", creates the "Structure Box" on the page.
+<SX load='3iy8' size='340' side='right' viewer='molstar' caption='[[3iy8]], [[Resolution|resolution]] 14.10&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3iy8]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12] and [https://en.wikipedia.org/wiki/Leishmania_tarentolae Leishmania tarentolae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IY8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IY8 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 14.1&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iy8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iy8 OCA], [https://pdbe.org/3iy8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iy8 RCSB], [https://www.ebi.ac.uk/pdbsum/3iy8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iy8 ProSAT]</span></td></tr>
-{{STRUCTURE_3iy8|  PDB=3iy8  |  SCENE=  }}
+</table>
+== Function ==
-===Leishmania tarentolae Mitonchondrial Ribosome small subunit===
+[https://www.uniprot.org/uniprot/RS5_ECOLI RS5_ECOLI] With S4 and S12 plays an important role in translational accuracy. Many suppressors of streptomycin-dependent mutants of protein S12 are found in this protein, some but not all of which decrease translational accuracy (ram, ribosomal ambiguity mutations).<ref>PMID:15652481</ref>   Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body.<ref>PMID:15652481</ref>   The physical location of this protein suggests it may also play a role in mRNA unwinding by the ribosome, possibly by forming part of a processivity clamp.<ref>PMID:15652481</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-<!--
+Check<jmol>
-The line below this paragraph, {{ABSTRACT_PUBMED_19497863}}, adds the Publication Abstract to the page
+  <jmolCheckbox>
-(as it appears on PubMed at http://www.pubmed.gov), where 19497863 is the PubMed ID number.
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iy/3iy8_consurf.spt"</scriptWhenChecked>
--->
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-{{ABSTRACT_PUBMED_19497863}}
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
-==About this Structure==
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3iy8 ConSurf].
-[[3iy8]] is a 11 chain structure of [[Ribosomal protein S11]], [[Ribosomal protein S12]], [[Ribosomal protein S15]], [[Ribosomal protein S16]], [[Ribosomal protein S17]], [[Ribosomal protein S18]], [[Ribosomal protein S5]], [[Ribosomal protein S6]], [[Ribosomal protein S8]] and [[Ribosomal protein S9]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Leishmania_tarentolae Leishmania tarentolae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IY8 OCA].
+<div style="clear:both"></div>
 ==See Also==
@@ Line 28: / Line 27: @@
 *[[Ribosomal protein S17|Ribosomal protein S17]]
 *[[Ribosomal protein S18|Ribosomal protein S18]]
-*[[Ribosomal protein S5|Ribosomal protein S5]]
-*[[Ribosomal protein S6|Ribosomal protein S6]]
 *[[Ribosomal protein S8|Ribosomal protein S8]]
 *[[Ribosomal protein S9|Ribosomal protein S9]]
+*[[Ribosome 3D structures|Ribosome 3D structures]]
-==Reference==
+== References ==
-<ref group="xtra">PMID:019497863</ref><references group="xtra"/>
+<references/>
-[[Category: Escherichia coli]]
+__TOC__
-[[Category: Leishmania tarentolae]]
+</SX>
-[[Category: Agrawal, R K.]]
+[[Category: Escherichia coli K-12]]
-[[Category: Booth, T M.]]
+[[Category: Large Structures]]
-[[Category: Maslov, D A.]]
-[[Category: Sharma, M R.]]
-[[Category: Simpson, L.]]
-[[Category: Antibiotic resistance]]
-[[Category: Cryoem]]
-[[Category: Endonuclease]]
-[[Category: Hydrolase]]
 [[Category: Leishmania tarentolae]]
-[[Category: Methylation]]
+[[Category: Agrawal RK]]
-[[Category: Minimal rna.]]
+[[Category: Booth TM]]
-[[Category: Mitochondrial ribosome]]
+[[Category: Maslov DA]]
-[[Category: Nuclease]]
+[[Category: Sharma MR]]
-[[Category: Repressor]]
+[[Category: Simpson L]]
-[[Category: Ribonucleoprotein]]
-[[Category: Ribosomal protein]]
-[[Category: Ribosome]]
-[[Category: Rna-binding]]
-[[Category: Rrna-binding]]
-[[Category: Translation regulation]]
-[[Category: Trna-binding]]