3hm7: Difference between revisions

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==Crystal structure of allantoinase from Bacillus halodurans C-125==
==Crystal structure of allantoinase from Bacillus halodurans C-125==
<StructureSection load='3hm7' size='340' side='right' caption='[[3hm7]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
<StructureSection load='3hm7' size='340' side='right'caption='[[3hm7]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3hm7]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_halodurans Bacillus halodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HM7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HM7 FirstGlance]. <br>
<table><tr><td colspan='2'>[[3hm7]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Alkalihalobacillus_halodurans Alkalihalobacillus halodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HM7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HM7 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">allB, pucH, BH2309 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=86665 Bacillus halodurans])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allantoinase Allantoinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.5 3.5.2.5] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hm7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hm7 OCA], [https://pdbe.org/3hm7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hm7 RCSB], [https://www.ebi.ac.uk/pdbsum/3hm7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hm7 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3hm7 TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hm7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hm7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hm7 RCSB], [http://www.ebi.ac.uk/pdbsum/3hm7 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3hm7 TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/ALLB_BACHD ALLB_BACHD]] Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring.  
[https://www.uniprot.org/uniprot/ALLB_HALH5 ALLB_HALH5] Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring.[HAMAP-Rule:MF_01645]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hm/3hm7_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hm/3hm7_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hm7 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Allantoinase]]
[[Category: Alkalihalobacillus halodurans]]
[[Category: Bacillus halodurans]]
[[Category: Large Structures]]
[[Category: Almo, S C]]
[[Category: Almo SC]]
[[Category: Burley, S K]]
[[Category: Burley SK]]
[[Category: Miller, S]]
[[Category: Miller S]]
[[Category: Structural genomic]]
[[Category: Patskovsky Y]]
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
[[Category: Raushel FM]]
[[Category: Patskovsky, Y]]
[[Category: Romero R]]
[[Category: Raushel, F M]]
[[Category: Rutter M]]
[[Category: Romero, R]]
[[Category: Sauder JM]]
[[Category: Rutter, M]]
[[Category: Wasserman SR]]
[[Category: Sauder, J M]]
[[Category: Wasserman, S R]]
[[Category: Dna-binding]]
[[Category: Hydrolase]]
[[Category: Metal-binding]]
[[Category: Metallo-dependent hydrolase]]
[[Category: PSI, Protein structure initiative]]
[[Category: Purine metabolism]]

Latest revision as of 13:00, 21 February 2024

Crystal structure of allantoinase from Bacillus halodurans C-125Crystal structure of allantoinase from Bacillus halodurans C-125

Structural highlights

3hm7 is a 6 chain structure with sequence from Alkalihalobacillus halodurans. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.6Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

ALLB_HALH5 Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring.[HAMAP-Rule:MF_01645]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3hm7, resolution 2.60Å

Drag the structure with the mouse to rotate

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