3h05: Difference between revisions

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-{{Seed}}
-[[Image:3h05.jpg|left|200px]]
-<!--
+==The Crystal Structure of a Putative Nicotinate-nucleotide Adenylyltransferase from Vibrio parahaemolyticus==
-The line below this paragraph, containing "STRUCTURE_3h05", creates the "Structure Box" on the page.
+<StructureSection load='3h05' size='340' side='right'caption='[[3h05]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3h05]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H05 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3H05 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-{{STRUCTURE_3h05|  PDB=3h05  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3h05 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3h05 OCA], [https://pdbe.org/3h05 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3h05 RCSB], [https://www.ebi.ac.uk/pdbsum/3h05 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3h05 ProSAT], [https://www.topsan.org/Proteins/MCSG/3h05 TOPSAN]</span></td></tr>
+</table>
-===Crystal Structure of a conserved hypothetical protein in the Nucleotidylyl Transferase Superfamily===
+== Function ==
+[https://www.uniprot.org/uniprot/Q87J40_VIBPA Q87J40_VIBPA]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-H05 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H05 OCA].
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h0/3h05_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3h05 ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Vibrio parahaemolyticus]]
-[[Category: Joachimiak, A.]]
+[[Category: Cuff ME]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Joachimiak A]]
-[[Category: Sather, A.]]
+[[Category: Sather A]]
-[[Category: Shackelford, G.]]
+[[Category: Shackelford G]]
-[[Category: Stein, A J.]]
+[[Category: Stein AJ]]
-[[Category: Mcsg]]
-[[Category: Midwest center for structural genomic]]
-[[Category: Nucleotidylyl]]
-[[Category: Protein structure initiative]]
-[[Category: Psi]]
-[[Category: Structural genomic]]
-[[Category: Transferase]]
-[[Category: Unknown function]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 22 11:46:42 2009''