3gg1: Difference between revisions

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[[Image:3gg1.png|left|200px]]


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==Klebsiella pneumoniae BlrP1 pH 8.0 calcium/cy-diGMP complex==
The line below this paragraph, containing "STRUCTURE_3gg1", creates the "Structure Box" on the page.
<StructureSection load='3gg1' size='340' side='right'caption='[[3gg1]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3gg1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 Klebsiella pneumoniae subsp. pneumoniae MGH 78578]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GG1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GG1 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C2E:9,9-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d 3,2-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)'>C2E</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
{{STRUCTURE_3gg1|  PDB=3gg1  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gg1 OCA], [https://pdbe.org/3gg1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gg1 RCSB], [https://www.ebi.ac.uk/pdbsum/3gg1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gg1 ProSAT]</span></td></tr>
 
</table>
===Klebsiella pneumoniae BlrP1 pH 8.0 calcium/cy-diGMP complex===
== Function ==
 
[https://www.uniprot.org/uniprot/A6T8V8_KLEP7 A6T8V8_KLEP7]
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_019536266}}, adds the Publication Abstract to the page
Check<jmol>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gg/3gg1_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_019536266}}
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    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
[[3gg1]] is a 2 chain structure of [[C-di-GMP specific phosphodiesterases]] with sequence from [http://en.wikipedia.org/wiki/Klebsiella_pneumoniae_subsp._pneumoniae_mgh_78578 Klebsiella pneumoniae subsp. pneumoniae mgh 78578]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GG1 OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gg1 ConSurf].
<div style="clear:both"></div>


==See Also==
==See Also==
*[[C-di-GMP specific phosphodiesterases|C-di-GMP specific phosphodiesterases]]
*[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]]
 
__TOC__
==Reference==
</StructureSection>
<ref group="xtra">PMID:019536266</ref><references group="xtra"/>
[[Category: Klebsiella pneumoniae subsp. pneumoniae MGH 78578]]
[[Category: Klebsiella pneumoniae subsp. pneumoniae mgh 78578]]
[[Category: Large Structures]]
[[Category: Barends, T.]]
[[Category: Barends T]]
[[Category: Beitlich, T.]]
[[Category: Beitlich T]]
[[Category: Gomelsky, M.]]
[[Category: Gomelsky M]]
[[Category: Griese, J.]]
[[Category: Griese J]]
[[Category: Hartmann, E.]]
[[Category: Hartmann E]]
[[Category: Kirienko, N.]]
[[Category: Kirienko N]]
[[Category: Reinstein, J.]]
[[Category: Reinstein J]]
[[Category: Ryjenkov, D.]]
[[Category: Ryjenkov D]]
[[Category: Schlichting, I.]]
[[Category: Schlichting I]]
[[Category: Shoeman, R.]]
[[Category: Shoeman R]]
[[Category: Bluf domain]]
[[Category: Eal domain]]
[[Category: Hydrolase]]
[[Category: Signaling protein]]
[[Category: Tim-barrel]]

Latest revision as of 12:54, 21 February 2024

Klebsiella pneumoniae BlrP1 pH 8.0 calcium/cy-diGMP complexKlebsiella pneumoniae BlrP1 pH 8.0 calcium/cy-diGMP complex

Structural highlights

3gg1 is a 2 chain structure with sequence from Klebsiella pneumoniae subsp. pneumoniae MGH 78578. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.3Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

A6T8V8_KLEP7

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

3gg1, resolution 2.30Å

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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