3efq: Difference between revisions

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[[Image:3efq.png|left|200px]]


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==T. Brucei Farnesyl Diphosphate Synthase Complexed with Bisphosphonate BPH-714==
The line below this paragraph, containing "STRUCTURE_3efq", creates the "Structure Box" on the page.
<StructureSection load='3efq' size='340' side='right'caption='[[3efq]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3efq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_brucei Trypanosoma brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EFQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EFQ FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=714:1-(2,2-DIPHOSPHONOETHYL)-3-(OCTYLOXY)PYRIDINIUM'>714</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
{{STRUCTURE_3efq|  PDB=3efq  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3efq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3efq OCA], [https://pdbe.org/3efq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3efq RCSB], [https://www.ebi.ac.uk/pdbsum/3efq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3efq ProSAT]</span></td></tr>
 
</table>
===T. Brucei Farnesyl Diphosphate Synthase Complexed with Bisphosphonate BPH-714===
== Function ==
 
[https://www.uniprot.org/uniprot/Q86C09_9TRYP Q86C09_9TRYP]
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_19309137}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 19309137 is the PubMed ID number.
  <jmolCheckbox>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ef/3efq_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_19309137}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
[[3efq]] is a 2 chain structure of [[Farnesyl diphosphate synthase]] with sequence from [http://en.wikipedia.org/wiki/Trypanosoma_brucei Trypanosoma brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EFQ OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3efq ConSurf].
<div style="clear:both"></div>


==See Also==
==See Also==
*[[Farnesyl diphosphate synthase|Farnesyl diphosphate synthase]]
*[[Farnesyl diphosphate synthase 3D structures|Farnesyl diphosphate synthase 3D structures]]
 
__TOC__
==Reference==
</StructureSection>
<ref group="xtra">PMID:019309137</ref><references group="xtra"/>
[[Category: Large Structures]]
[[Category: Geranyltranstransferase]]
[[Category: Trypanosoma brucei]]
[[Category: Trypanosoma brucei]]
[[Category: Cao, R.]]
[[Category: Cao R]]
[[Category: Gao, Y.]]
[[Category: Gao Y]]
[[Category: Oldfield, E.]]
[[Category: Oldfield E]]
[[Category: Robinson, H.]]
[[Category: Robinson H]]
[[Category: Isoprene biosynthesis]]
[[Category: Protein-bisphosphonate complex]]
[[Category: Transferase]]

Latest revision as of 12:47, 21 February 2024

T. Brucei Farnesyl Diphosphate Synthase Complexed with Bisphosphonate BPH-714T. Brucei Farnesyl Diphosphate Synthase Complexed with Bisphosphonate BPH-714

Structural highlights

3efq is a 2 chain structure with sequence from Trypanosoma brucei. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q86C09_9TRYP

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

3efq, resolution 2.00Å

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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