3e6c: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(8 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:3e6c.png|left|200px]]


<!--
==CprK OCPA DNA Complex==
The line below this paragraph, containing "STRUCTURE_3e6c", creates the "Structure Box" on the page.
<StructureSection load='3e6c' size='340' side='right'caption='[[3e6c]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3e6c]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfitobacterium_hafniense_DCB-2 Desulfitobacterium hafniense DCB-2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E6C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E6C FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3C4:(3-CHLORO-4-HYDROXYPHENYL)ACETIC+ACID'>3C4</scene></td></tr>
{{STRUCTURE_3e6c|  PDB=3e6c  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e6c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e6c OCA], [https://pdbe.org/3e6c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e6c RCSB], [https://www.ebi.ac.uk/pdbsum/3e6c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e6c ProSAT]</span></td></tr>
 
</table>
===CprK OCPA DNA Complex===
== Function ==
 
[https://www.uniprot.org/uniprot/B8FW11_DESHD B8FW11_DESHD]  
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_18717788}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 18717788 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e6/3e6c_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_18717788}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
3E6C is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Desulfitobacterium_hafniense Desulfitobacterium hafniense]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E6C OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e6c ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
Molecular basis of halorespiration control by CprK, a CRP-FNR type transcriptional regulator., Levy C, Pike K, Heyes DJ, Joyce MG, Gabor K, Smidt H, van der Oost J, Leys D, Mol Microbiol. 2008 Aug 20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18717788 18717788]
</StructureSection>
[[Category: Desulfitobacterium hafniense]]
[[Category: Desulfitobacterium hafniense DCB-2]]
[[Category: Levy, C.]]
[[Category: Large Structures]]
[[Category: Cprk]]
[[Category: Levy C]]
[[Category: Halorespiration]]
[[Category: Transcription regulation/dna complex]]
[[Category: Transcriptional regulator]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 24 11:09:09 2008''

Latest revision as of 12:45, 21 February 2024

CprK OCPA DNA ComplexCprK OCPA DNA Complex

Structural highlights

3e6c is a 3 chain structure with sequence from Desulfitobacterium hafniense DCB-2. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.8Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

B8FW11_DESHD

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3e6c, resolution 1.80Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=3e6c&oldid=4064437"