3e3m: Difference between revisions

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-{{Seed}}
-[[Image:3e3m.jpg|left|200px]]
-<!--
+==Crystal structure of a LacI family transcriptional regulator from Silicibacter pomeroyi==
-The line below this paragraph, containing "STRUCTURE_3e3m", creates the "Structure Box" on the page.
+<StructureSection load='3e3m' size='340' side='right'caption='[[3e3m]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3e3m]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_pomeroyi Ruegeria pomeroyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E3M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E3M FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e3m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e3m OCA], [https://pdbe.org/3e3m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e3m RCSB], [https://www.ebi.ac.uk/pdbsum/3e3m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e3m ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3e3m TOPSAN]</span></td></tr>
-{{STRUCTURE_3e3m|  PDB=3e3m  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q5LKY7_RUEPO Q5LKY7_RUEPO]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e3/3e3m_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e3m ConSurf].
+<div style="clear:both"></div>
-===Crystal structure of a LacI family transcriptional regulator from Silicibacter pomeroyi===
+==See Also==
+*[[Transcriptional activator 3D structures|Transcriptional activator 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-E3M is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Silicibacter_pomeroyi Silicibacter pomeroyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E3M OCA].
+[[Category: Large Structures]]
-[[Category: Silicibacter pomeroyi]]
+[[Category: Ruegeria pomeroyi]]
-[[Category: Single protein]]
+[[Category: Almo SC]]
-[[Category: Almo, S C.]]
+[[Category: Bain KT]]
-[[Category: Bain, K T.]]
+[[Category: Bonanno JB]]
-[[Category: Bonanno, J B.]]
+[[Category: Burley SK]]
-[[Category: Burley, S K.]]
+[[Category: Freeman J]]
-[[Category: Freeman, J.]]
+[[Category: Iizuka M]]
-[[Category: Iizuka, M.]]
+[[Category: Ozyurt S]]
-[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+[[Category: Sauder JM]]
-[[Category: Ozyurt, S.]]
+[[Category: Smith D]]
-[[Category: Sauder, J M.]]
+[[Category: Wasserman S]]
-[[Category: Smith, D.]]
-[[Category: Wasserman, S.]]
-[[Category: Dna-binding]]
-[[Category: New york sgx research center for structural genomic]]
-[[Category: Nysgxrc]]
-[[Category: Plasmid]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
-[[Category: Transcription]]
-[[Category: Transcription regulation]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 27 11:36:06 2008''