3e1m: Difference between revisions

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-{{Seed}}
-[[Image:3e1m.png|left|200px]]
-<!--
+==Crystal structure of E. coli Bacterioferritin (BFR) obtained after soaking APO-BFR crystals for 2.5 minutes in FE2+ (2.5M FE(II)-BFR)==
-The line below this paragraph, containing "STRUCTURE_3e1m", creates the "Structure Box" on the page.
+<StructureSection load='3e1m' size='340' side='right'caption='[[3e1m]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3e1m]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E1M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E1M FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-{{STRUCTURE_3e1m|  PDB=3e1m  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e1m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e1m OCA], [https://pdbe.org/3e1m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e1m RCSB], [https://www.ebi.ac.uk/pdbsum/3e1m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e1m ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/BFR_ECOLI BFR_ECOLI] Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex. The mineralized iron core can contain as many as 2700 iron atoms/24-meric molecule.<ref>PMID:10769150</ref> <ref>PMID:14636073</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e1/3e1m_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e1m ConSurf].
+<div style="clear:both"></div>
-===Crystal structure of E. coli Bacterioferritin (BFR) obtained after soaking APO-BFR crystals for 2.5 minutes in FE2+ (2.5M FE(II)-BFR)===
+==See Also==
+*[[Ferritin 3D structures|Ferritin 3D structures]]
+== References ==
-<!--
+<references/>
-The line below this paragraph, {{ABSTRACT_PUBMED_19391621}}, adds the Publication Abstract to the page
+__TOC__
-(as it appears on PubMed at http://www.pubmed.gov), where 19391621 is the PubMed ID number.
+</StructureSection>
--->
+[[Category: Escherichia coli K-12]]
-{{ABSTRACT_PUBMED_19391621}}
+[[Category: Large Structures]]
+[[Category: Crow A]]
-==About this Structure==
+[[Category: Lawson T]]
-E1M is a 12 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E1M OCA].
+[[Category: Le Brun N]]
+[[Category: Lewin A]]
-==Reference==
+[[Category: Moore GR]]
-<ref group="xtra">PMID:19391621</ref><references group="xtra"/>
-[[Category: Escherichia coli]]
-[[Category: Brun, N Le.]]
-[[Category: Crow, A.]]
-[[Category: Lawson, T.]]
-[[Category: Lewin, A.]]
-[[Category: Moore, G R.]]
-[[Category: Bacterioferritin. rhombic dodecahedral superstructure.]]
-[[Category: Heme]]
-[[Category: Iron]]
-[[Category: Iron storage]]
-[[Category: Metal binding protein]]
-[[Category: Metal-binding]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 27 14:37:44 2009''