3dp7: Difference between revisions

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 ==CRYSTAL STRUCTURE OF SAM-dependent methyltransferase from Bacteroides vulgatus ATCC 8482==
-<StructureSection load='3dp7' size='340' side='right' caption='[[3dp7]], [[Resolution|resolution]] 2.33&Aring;' scene=''>
+<StructureSection load='3dp7' size='340' side='right'caption='[[3dp7]], [[Resolution|resolution]] 2.33&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3dp7]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_vulgatus Bacteroides vulgatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DP7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DP7 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3dp7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Phocaeicola_vulgatus_ATCC_8482 Phocaeicola vulgatus ATCC 8482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DP7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DP7 FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BVU_1015 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=821 Bacteroides vulgatus])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.33&#8491;</td></tr>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dp7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dp7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dp7 RCSB], [http://www.ebi.ac.uk/pdbsum/3dp7 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3dp7 TOPSAN]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dp7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dp7 OCA], [https://pdbe.org/3dp7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dp7 RCSB], [https://www.ebi.ac.uk/pdbsum/3dp7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dp7 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3dp7 TOPSAN]</span></td></tr>
-<table>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/A6KZ44_PHOV8 A6KZ44_PHOV8]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dp/3dp7_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dp/3dp7_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dp7 ConSurf].
 <div style="clear:both"></div>
 ==See Also==
-*[[SAM-dependent methyltransferase|SAM-dependent methyltransferase]]
+*[[SAM-dependent methyltrasferase 3D structures|SAM-dependent methyltrasferase 3D structures]]
 __TOC__
 </StructureSection>
-[[Category: Bacteroides vulgatus]]
+[[Category: Large Structures]]
-[[Category: Almo, S C.]]
+[[Category: Phocaeicola vulgatus ATCC 8482]]
-[[Category: Burley, S K.]]
+[[Category: Almo SC]]
-[[Category: Malashkevich, V N.]]
+[[Category: Burley SK]]
-[[Category: Meyer, A J.]]
+[[Category: Malashkevich VN]]
-[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+[[Category: Meyer AJ]]
-[[Category: Ramagopal, U.]]
+[[Category: Ramagopal U]]
-[[Category: Sauder, J M.]]
+[[Category: Sauder JM]]
-[[Category: Toro, R.]]
+[[Category: Toro R]]
-[[Category: Methyltransferase]]
-[[Category: New york sgx research center for structural genomic]]
-[[Category: New york structural genomix research]]
-[[Category: Nysgxrc]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Sam-dependent methyltransferase =consortium]]
-[[Category: Structural genomic]]
-[[Category: Transferase]]