3dm3: Difference between revisions

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-[[Image:3dm3.png|left|200px]]
-{{STRUCTURE_3dm3|  PDB=3dm3  |  SCENE=  }}
+==Crystal structure of a domain of a Replication factor A protein, from Methanocaldococcus jannaschii. NorthEast Structural Genomics target MjR118E==
+<StructureSection load='3dm3' size='340' side='right'caption='[[3dm3]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3dm3]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DM3 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dm3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dm3 OCA], [https://pdbe.org/3dm3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dm3 RCSB], [https://www.ebi.ac.uk/pdbsum/3dm3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dm3 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/RPA_METJA RPA_METJA] Probably plays an essential for replication of the chromosome, DNA recombination and repair (By similarity).
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dm3_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dm3 ConSurf].
+<div style="clear:both"></div>
-===Crystal structure of a domain of a Replication factor A protein, from Methanocaldococcus jannaschii. NorthEast Structural Genomics target MjR118E===
+==See Also==
+*[[Single-stranded DNA-binding protein 3D structures|Single-stranded DNA-binding protein 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-[[3dm3]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM3 OCA].
+[[Category: Large Structures]]
 [[Category: Methanocaldococcus jannaschii]]
-[[Category: Acton, T B.]]
+[[Category: Acton TB]]
-[[Category: Ciccosanti, C.]]
+[[Category: Ciccosanti C]]
-[[Category: Everett, J K.]]
+[[Category: Everett JK]]
-[[Category: Hunt, J F.]]
+[[Category: Hunt JF]]
-[[Category: Janjua, H.]]
+[[Category: Janjua H]]
-[[Category: Maglaqui, M.]]
+[[Category: Maglaqui M]]
-[[Category: Montelione, G T.]]
+[[Category: Montelione GT]]
-[[Category: NESG, Northeast Structural Genomics Consortium.]]
+[[Category: Nair R]]
-[[Category: Nair, R.]]
+[[Category: Rost B]]
-[[Category: Rost, B.]]
+[[Category: Seetharaman J]]
-[[Category: Seetharaman, J.]]
+[[Category: Su M]]
-[[Category: Su, M.]]
+[[Category: Tong L]]
-[[Category: Tong, L.]]
+[[Category: Xiao R]]
-[[Category: Xiao, R.]]
-[[Category: Dna damage]]
-[[Category: Dna recombination and repair]]
-[[Category: Dna repair]]
-[[Category: Dna replication]]
-[[Category: Dna-binding]]
-[[Category: Metal-binding]]
-[[Category: Nesg]]
-[[Category: Northeast structural genomics consortium]]
-[[Category: Probably plays an essential for replication of the chromosome]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Replication]]
-[[Category: Replication factor a synonyms rp-a rf-a replication factor a protein 1 single-stranded dna-binding protein]]
-[[Category: Structural genomic]]
-[[Category: Zinc-finger]]