3dlu: Difference between revisions

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-{{Seed}}
-[[Image:3dlu.png|left|200px]]
-<!--
+==Structures of SRP54 and SRP19, the two proteins assembling the ribonucleic core of the Signal Recognition Particle from the archaeon Pyrococcus furiosus.==
-The line below this paragraph, containing "STRUCTURE_3dlu", creates the "Structure Box" on the page.
+<StructureSection load='3dlu' size='340' side='right'caption='[[3dlu]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3dlu]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DLU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DLU FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene></td></tr>
-{{STRUCTURE_3dlu|  PDB=3dlu  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dlu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dlu OCA], [https://pdbe.org/3dlu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dlu RCSB], [https://www.ebi.ac.uk/pdbsum/3dlu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dlu ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/SRP19_PYRFU SRP19_PYRFU] Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP (By similarity).
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dl/3dlu_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dlu ConSurf].
+<div style="clear:both"></div>
-===Structures of SRP54 and SRP19, the two proteins assembling the ribonucleic core of the Signal Recognition Particle from the archaeon Pyrococcus furiosus.===
+==See Also==
+*[[Signal recognition particle 3D structures|Signal recognition particle 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_18953414}}, adds the Publication Abstract to the page
+[[Category: Large Structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 18953414 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_18953414}}
-==About this Structure==
-DLU is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DLU OCA].
-==Reference==
-<ref group="xtra">PMID:18953414</ref><references group="xtra"/>
 [[Category: Pyrococcus furiosus]]
-[[Category: Egea, P F.]]
+[[Category: Egea PF]]
-[[Category: Napetschnig, J.]]
+[[Category: Napetschnig J]]
-[[Category: Stroud, R M.]]
+[[Category: Stroud RM]]
-[[Category: Walter, P.]]
+[[Category: Walter P]]
-[[Category: Cytoplasm]]
-[[Category: Protein-rna]]
-[[Category: Ribonucleoprotein]]
-[[Category: Rna binding protein]]
-[[Category: Rna-binding]]
-[[Category: Signal recognition particle]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 16:32:57 2009''