3de9: Difference between revisions

Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(9 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:3de9.jpg|left|200px]]


<!--
==Crystal Structure of a Trimeric Cytochrome cb562 Assembly Induced by Nickel Coordination==
The line below this paragraph, containing "STRUCTURE_3de9", creates the "Structure Box" on the page.
<StructureSection load='3de9' size='340' side='right'caption='[[3de9]], [[Resolution|resolution]] 2.04&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3de9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DE9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DE9 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.04&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
{{STRUCTURE_3de9| PDB=3de9 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3de9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3de9 OCA], [https://pdbe.org/3de9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3de9 RCSB], [https://www.ebi.ac.uk/pdbsum/3de9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3de9 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/C562_ECOLX C562_ECOLX] Electron-transport protein of unknown function.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/3de9_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3de9 ConSurf].
<div style="clear:both"></div>


===Crystal Structure of a Trimeric Cytochrome cb562 Assembly Induced by Nickel Coordination===
==See Also==
 
*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
 
*[[Cytochrome b5 3D structures|Cytochrome b5 3D structures]]
<!--
__TOC__
The line below this paragraph, {{ABSTRACT_PUBMED_19267481}}, adds the Publication Abstract to the page
</StructureSection>
(as it appears on PubMed at http://www.pubmed.gov), where 19267481 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_19267481}}
 
==About this Structure==
3DE9 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DE9 OCA].
 
==Reference==
<ref group="xtra">PMID:19267481</ref><references group="xtra"/>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Lewis, R A.]]
[[Category: Large Structures]]
[[Category: Rheingold, A L.]]
[[Category: Lewis RA]]
[[Category: Salgado, E N.]]
[[Category: Rheingold AL]]
[[Category: Tezcan, F A.]]
[[Category: Salgado EN]]
[[Category: Electron transport]]
[[Category: Tezcan FA]]
[[Category: Heme]]
[[Category: Iron]]
[[Category: Metal binding protein]]
[[Category: Metal-binding]]
[[Category: Ni-stabilized trimeric superstructure]]
[[Category: Periplasm]]
[[Category: Transport]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 22 11:33:06 2009''

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/w/3de9"