3de9: Difference between revisions

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-[[Image:3de9.png|left|200px]]
-{{STRUCTURE_3de9|  PDB=3de9  |  SCENE=  }}
+==Crystal Structure of a Trimeric Cytochrome cb562 Assembly Induced by Nickel Coordination==
+<StructureSection load='3de9' size='340' side='right'caption='[[3de9]], [[Resolution|resolution]] 2.04&Aring;' scene=''>
-===Crystal Structure of a Trimeric Cytochrome cb562 Assembly Induced by Nickel Coordination===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3de9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DE9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DE9 FirstGlance]. <br>
-{{ABSTRACT_PUBMED_19267481}}
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.04&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-==About this Structure==
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3de9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3de9 OCA], [https://pdbe.org/3de9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3de9 RCSB], [https://www.ebi.ac.uk/pdbsum/3de9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3de9 ProSAT]</span></td></tr>
-[[3de9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DE9 OCA].
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/C562_ECOLX C562_ECOLX] Electron-transport protein of unknown function.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/3de9_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3de9 ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Cytochrome b5|Cytochrome b5]]
+*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
-*[[Cytochrome c|Cytochrome c]]
+*[[Cytochrome b5 3D structures|Cytochrome b5 3D structures]]
+__TOC__
-==Reference==
+</StructureSection>
-<ref group="xtra">PMID:019267481</ref><references group="xtra"/>
 [[Category: Escherichia coli]]
-[[Category: Lewis, R A.]]
+[[Category: Large Structures]]
-[[Category: Rheingold, A L.]]
+[[Category: Lewis RA]]
-[[Category: Salgado, E N.]]
+[[Category: Rheingold AL]]
-[[Category: Tezcan, F A.]]
+[[Category: Salgado EN]]
-[[Category: Electron transport]]
+[[Category: Tezcan FA]]
-[[Category: Heme]]
-[[Category: Iron]]
-[[Category: Metal binding protein]]
-[[Category: Metal-binding]]
-[[Category: Ni-stabilized trimeric superstructure]]
-[[Category: Transport]]