3cym: Difference between revisions

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[[Image:3cym.png|left|200px]]


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==Crystal structure of protein BAD_0989 from Bifidobacterium adolescentis==
The line below this paragraph, containing "STRUCTURE_3cym", creates the "Structure Box" on the page.
<StructureSection load='3cym' size='340' side='right'caption='[[3cym]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3cym]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bifidobacterium_adolescentis_ATCC_15703 Bifidobacterium adolescentis ATCC 15703]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CYM FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
{{STRUCTURE_3cym|  PDB=3cym  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cym FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cym OCA], [https://pdbe.org/3cym PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cym RCSB], [https://www.ebi.ac.uk/pdbsum/3cym PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cym ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3cym TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of protein BAD_0989 from Bifidobacterium adolescentis===
== Function ==
 
[https://www.uniprot.org/uniprot/A1A237_BIFAA A1A237_BIFAA]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3CYM is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bifidobacterium_adolescentis_atcc_15703 Bifidobacterium adolescentis atcc 15703]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYM OCA].  
Check<jmol>
[[Category: Bifidobacterium adolescentis atcc 15703]]
  <jmolCheckbox>
[[Category: Almo, S C.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/3cym_consurf.spt"</scriptWhenChecked>
[[Category: Bain, K.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Burley, S K.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Chang, S.]]
  </jmolCheckbox>
[[Category: Freeman, J.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cym ConSurf].
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
<div style="clear:both"></div>
[[Category: Ozyurt, S.]]
__TOC__
[[Category: Patskovsky, Y.]]
</StructureSection>
[[Category: Sauder, J M.]]
[[Category: Bifidobacterium adolescentis ATCC 15703]]
[[Category: Wasserman, S R.]]
[[Category: Large Structures]]
[[Category: Exonuclease]]
[[Category: Almo SC]]
[[Category: New york structural genomix research consortium]]
[[Category: Bain K]]
[[Category: Nysgxrc]]
[[Category: Burley SK]]
[[Category: Protein structure initiative]]
[[Category: Chang S]]
[[Category: Psi-2]]
[[Category: Freeman J]]
[[Category: Ribonuclease d]]
[[Category: Ozyurt S]]
[[Category: Structural genomic]]
[[Category: Patskovsky Y]]
[[Category: Uncharacterized protein]]
[[Category: Sauder JM]]
[[Category: Unknown function]]
[[Category: Wasserman SR]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:00:54 2008''

Latest revision as of 12:39, 21 February 2024

Crystal structure of protein BAD_0989 from Bifidobacterium adolescentisCrystal structure of protein BAD_0989 from Bifidobacterium adolescentis

Structural highlights

3cym is a 1 chain structure with sequence from Bifidobacterium adolescentis ATCC 15703. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.1Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

A1A237_BIFAA

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3cym, resolution 2.10Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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