3cym: Difference between revisions

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==Crystal structure of protein BAD_0989 from Bifidobacterium adolescentis==
==Crystal structure of protein BAD_0989 from Bifidobacterium adolescentis==
<StructureSection load='3cym' size='340' side='right' caption='[[3cym]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='3cym' size='340' side='right'caption='[[3cym]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3cym]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bifaa Bifaa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CYM FirstGlance]. <br>
<table><tr><td colspan='2'>[[3cym]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bifidobacterium_adolescentis_ATCC_15703 Bifidobacterium adolescentis ATCC 15703]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CYM FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BAD_0989 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=367928 BIFAA])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cym FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cym OCA], [http://pdbe.org/3cym PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cym RCSB], [http://www.ebi.ac.uk/pdbsum/3cym PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3cym ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/3cym TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cym FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cym OCA], [https://pdbe.org/3cym PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cym RCSB], [https://www.ebi.ac.uk/pdbsum/3cym PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cym ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3cym TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/A1A237_BIFAA A1A237_BIFAA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/3cym_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/3cym_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bifaa]]
[[Category: Bifidobacterium adolescentis ATCC 15703]]
[[Category: Almo, S C]]
[[Category: Large Structures]]
[[Category: Bain, K]]
[[Category: Almo SC]]
[[Category: Burley, S K]]
[[Category: Bain K]]
[[Category: Chang, S]]
[[Category: Burley SK]]
[[Category: Freeman, J]]
[[Category: Chang S]]
[[Category: Structural genomic]]
[[Category: Freeman J]]
[[Category: Ozyurt, S]]
[[Category: Ozyurt S]]
[[Category: Patskovsky, Y]]
[[Category: Patskovsky Y]]
[[Category: Sauder, J M]]
[[Category: Sauder JM]]
[[Category: Wasserman, S R]]
[[Category: Wasserman SR]]
[[Category: Exonuclease]]
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
[[Category: PSI, Protein structure initiative]]
[[Category: Ribonuclease d]]
[[Category: Uncharacterized protein]]
[[Category: Unknown function]]

Latest revision as of 12:39, 21 February 2024

Crystal structure of protein BAD_0989 from Bifidobacterium adolescentisCrystal structure of protein BAD_0989 from Bifidobacterium adolescentis

Structural highlights

3cym is a 1 chain structure with sequence from Bifidobacterium adolescentis ATCC 15703. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.1Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

A1A237_BIFAA

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3cym, resolution 2.10Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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