3cta: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:3cta.png|left|200px]]
-<!--
+==Crystal structure of riboflavin kinase from Thermoplasma acidophilum==
-The line below this paragraph, containing "STRUCTURE_3cta", creates the "Structure Box" on the page.
+<StructureSection load='3cta' size='340' side='right'caption='[[3cta]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3cta]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoplasma_acidophilum_DSM_1728 Thermoplasma acidophilum DSM 1728]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CTA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CTA FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cta FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cta OCA], [https://pdbe.org/3cta PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cta RCSB], [https://www.ebi.ac.uk/pdbsum/3cta PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cta ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3cta TOPSAN]</span></td></tr>
-{{STRUCTURE_3cta|  PDB=3cta  |  SCENE=  }}
+</table>
+== Function ==
-===Crystal structure of riboflavin kinase from Thermoplasma acidophilum===
+[https://www.uniprot.org/uniprot/RIFK_THEAC RIFK_THEAC] Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN).
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-==About this Structure==
+Check<jmol>
-CTA is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum_dsm_1728 Thermoplasma acidophilum dsm 1728]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CTA OCA].
+  <jmolCheckbox>
-[[Category: Single protein]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ct/3cta_consurf.spt"</scriptWhenChecked>
-[[Category: Thermoplasma acidophilum dsm 1728]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Almo, S C.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Bain, K T.]]
+  </jmolCheckbox>
-[[Category: Bonanno, J B.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cta ConSurf].
-[[Category: Burley, S K.]]
+<div style="clear:both"></div>
-[[Category: Mendoza, M.]]
+__TOC__
-[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+</StructureSection>
-[[Category: Romero, R.]]
+[[Category: Large Structures]]
-[[Category: Rutter, M.]]
+[[Category: Thermoplasma acidophilum DSM 1728]]
-[[Category: Sauder, J M.]]
+[[Category: Almo SC]]
-[[Category: Smith, D.]]
+[[Category: Bain KT]]
-[[Category: Wasserman, S.]]
+[[Category: Bonanno JB]]
-[[Category: Fmn]]
+[[Category: Burley SK]]
-[[Category: Kinase]]
+[[Category: Mendoza M]]
-[[Category: Magnesium]]
+[[Category: Romero R]]
-[[Category: Metal-binding]]
+[[Category: Rutter M]]
-[[Category: New york sgx research center for structural genomic]]
+[[Category: Sauder JM]]
-[[Category: Nucleotide-binding]]
+[[Category: Smith D]]
-[[Category: Nysgxrc]]
+[[Category: Wasserman S]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
-[[Category: Transferase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 16 08:53:32 2008''