3c3k: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(16 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:3c3k.jpg|left|200px]]<br /><applet load="3c3k" size="350" color="white" frame="true" align="right" spinBox="true"
caption="3c3k, resolution 1.990&Aring;" />
'''Crystal structure of an uncharacterized protein from Actinobacillus succinogenes'''<br />


==About this Structure==
==Crystal structure of an uncharacterized protein from Actinobacillus succinogenes==
3C3K is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Actinobacillus_succinogenes_130z Actinobacillus succinogenes 130z] with <scene name='pdbligand=CL:'>CL</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Alanine_racemase Alanine racemase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.1 5.1.1.1] Known structural/functional Sites: <scene name='pdbsite=AC1:Cl+Binding+Site+For+Residue+B+301'>AC1</scene>, <scene name='pdbsite=AC2:Gol+Binding+Site+For+Residue+A+302'>AC2</scene> and <scene name='pdbsite=AC3:Gol+Binding+Site+For+Residue+B+303'>AC3</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C3K OCA].
<StructureSection load='3c3k' size='340' side='right'caption='[[3c3k]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
[[Category: Actinobacillus succinogenes 130z]]
== Structural highlights ==
[[Category: Alanine racemase]]
<table><tr><td colspan='2'>[[3c3k]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Actinobacillus_succinogenes_130Z Actinobacillus succinogenes 130Z]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C3K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C3K FirstGlance]. <br>
[[Category: Single protein]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99&#8491;</td></tr>
[[Category: Almo, S.C.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
[[Category: Burley, S.K.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c3k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c3k OCA], [https://pdbe.org/3c3k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c3k RCSB], [https://www.ebi.ac.uk/pdbsum/3c3k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c3k ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3c3k TOPSAN]</span></td></tr>
[[Category: Malashkevich, V.N.]]
</table>
[[Category: Meyer, A.J.]]
== Function ==
[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
[https://www.uniprot.org/uniprot/A6VL88_ACTSZ A6VL88_ACTSZ]  
[[Category: Sauder, J.M.]]
== Evolutionary Conservation ==
[[Category: Toro, R.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: CL]]
Check<jmol>
[[Category: GOL]]
  <jmolCheckbox>
[[Category: crystal structure]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c3/3c3k_consurf.spt"</scriptWhenChecked>
[[Category: dna-binding]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: isomerase]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: new york structural genomix research consortium]]
  </jmolCheckbox>
[[Category: nysgxrc]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c3k ConSurf].
[[Category: protein structure initiative]]
<div style="clear:both"></div>
[[Category: psi-2]]
[[Category: structural genomics]]
[[Category: transcription]]
[[Category: transcription regulation]]


''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb  6 17:27:25 2008''
==See Also==
*[[Alanine racemase 3D structures|Alanine racemase 3D structures]]
__TOC__
</StructureSection>
[[Category: Actinobacillus succinogenes 130Z]]
[[Category: Large Structures]]
[[Category: Almo SC]]
[[Category: Burley SK]]
[[Category: Malashkevich VN]]
[[Category: Meyer AJ]]
[[Category: Sauder JM]]
[[Category: Toro R]]

Latest revision as of 12:32, 21 February 2024

Crystal structure of an uncharacterized protein from Actinobacillus succinogenesCrystal structure of an uncharacterized protein from Actinobacillus succinogenes

Structural highlights

3c3k is a 2 chain structure with sequence from Actinobacillus succinogenes 130Z. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.99Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

A6VL88_ACTSZ

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

3c3k, resolution 1.99Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=3c3k&oldid=4063713"