3bv6: Difference between revisions

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-[[Image:3bv6.jpg|left|200px]]<br /><applet load="3bv6" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="3bv6, resolution 1.80&Aring;" />
-'''Crystal structure of uncharacterized metallo protein from Vibrio cholerae with beta-lactamase like fold'''<br />
-==About this Structure==
+==Crystal structure of uncharacterized metallo protein from Vibrio cholerae with beta-lactamase like fold==
-BV6 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae_o1_biovar_eltor_str._n16961 Vibrio cholerae o1 biovar eltor str. n16961] with <scene name='pdbligand=FE:'>FE</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Known structural/functional Sites: <scene name='pdbsite=AC1:Fe+Binding+Site+For+Residue+A+401'>AC1</scene>, <scene name='pdbsite=AC2:Fe+Binding+Site+For+Residue+A+402'>AC2</scene>, <scene name='pdbsite=AC3:Fe+Binding+Site+For+Residue+B+401'>AC3</scene>, <scene name='pdbsite=AC4:Fe+Binding+Site+For+Residue+B+402'>AC4</scene>, <scene name='pdbsite=AC5:Fe+Binding+Site+For+Residue+C+401'>AC5</scene>, <scene name='pdbsite=AC6:Fe+Binding+Site+For+Residue+C+402'>AC6</scene>, <scene name='pdbsite=AC7:Fe+Binding+Site+For+Residue+D+401'>AC7</scene>, <scene name='pdbsite=AC8:Fe+Binding+Site+For+Residue+D+402'>AC8</scene>, <scene name='pdbsite=AC9:Fe+Binding+Site+For+Residue+E+401'>AC9</scene>, <scene name='pdbsite=BC1:Fe+Binding+Site+For+Residue+E+402'>BC1</scene>, <scene name='pdbsite=BC2:Fe+Binding+Site+For+Residue+F+401'>BC2</scene> and <scene name='pdbsite=BC3:Fe+Binding+Site+For+Residue+F+402'>BC3</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BV6 OCA].
+<StructureSection load='3bv6' size='340' side='right'caption='[[3bv6]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-[[Category: Single protein]]
+== Structural highlights ==
-[[Category: Vibrio cholerae o1 biovar eltor str. n16961]]
+<table><tr><td colspan='2'>[[3bv6]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 Vibrio cholerae O1 biovar El Tor str. N16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BV6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BV6 FirstGlance]. <br>
-[[Category: Anderson, W F.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-[[Category: Brunzelle, J S.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
-[[Category: Collart, F R.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bv6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bv6 OCA], [https://pdbe.org/3bv6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bv6 RCSB], [https://www.ebi.ac.uk/pdbsum/3bv6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bv6 ProSAT], [https://www.topsan.org/Proteins/MCSG/3bv6 TOPSAN]</span></td></tr>
-[[Category: Joachimiak, A.]]
+</table>
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+== Function ==
-[[Category: Minasov, G.]]
+[https://www.uniprot.org/uniprot/Q9KMS2_VIBCH Q9KMS2_VIBCH]
-[[Category: Shuvalova, L.]]
+== Evolutionary Conservation ==
-[[Category: Yang, X.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: FE]]
+Check<jmol>
-[[Category: beta-lactamase like fold]]
+  <jmolCheckbox>
-[[Category: hydrolase]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bv/3bv6_consurf.spt"</scriptWhenChecked>
-[[Category: mcsg]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: metallo protein]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: midwest center for structural genomics]]
+  </jmolCheckbox>
-[[Category: protein structure initiative]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bv6 ConSurf].
-[[Category: psi-2]]
+<div style="clear:both"></div>
-[[Category: structural genomics]]
+__TOC__
+</StructureSection>
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 19:07:41 2008''
+[[Category: Large Structures]]
+[[Category: Vibrio cholerae O1 biovar El Tor str. N16961]]
+[[Category: Anderson WF]]
+[[Category: Brunzelle JS]]
+[[Category: Collart FR]]
+[[Category: Joachimiak A]]
+[[Category: Minasov G]]
+[[Category: Shuvalova L]]
+[[Category: Yang X]]