3bpv: Difference between revisions

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-{{Seed}}
-[[Image:3bpv.png|left|200px]]
-<!--
+==Crystal Structure of MarR==
-The line below this paragraph, containing "STRUCTURE_3bpv", creates the "Structure Box" on the page.
+<StructureSection load='3bpv' size='340' side='right'caption='[[3bpv]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3bpv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanothermobacter_marburgensis_str._Marburg Methanothermobacter marburgensis str. Marburg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BPV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BPV FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bpv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bpv OCA], [https://pdbe.org/3bpv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bpv RCSB], [https://www.ebi.ac.uk/pdbsum/3bpv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bpv ProSAT]</span></td></tr>
-{{STRUCTURE_3bpv|  PDB=3bpv  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/O26413_METTH O26413_METTH]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bp/3bpv_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bpv ConSurf].
+<div style="clear:both"></div>
-===Crystal Structure of MarR===
+==See Also==
+*[[Transcriptional activator 3D structures|Transcriptional activator 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_18272181}}, adds the Publication Abstract to the page
+[[Category: Large Structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 18272181 is the PubMed ID number.
+[[Category: Methanothermobacter marburgensis str. Marburg]]
--->
+[[Category: Christendat D]]
-{{ABSTRACT_PUBMED_18272181}}
+[[Category: Saridakis V]]
+[[Category: Shahinas D]]
-==About this Structure==
+[[Category: Xu X]]
-BPV is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Methanothermobacter_thermautotrophicus Methanothermobacter thermautotrophicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BPV OCA].
-==Reference==
-Structural insight on the mechanism of regulation of the MarR family of proteins: high-resolution crystal structure of a transcriptional repressor from Methanobacterium thermoautotrophicum., Saridakis V, Shahinas D, Xu X, Christendat D, J Mol Biol. 2008 Mar 28;377(3):655-67. Epub 2008 Jan 11. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18272181 18272181]
-[[Category: Methanothermobacter thermautotrophicus]]
-[[Category: Single protein]]
-[[Category: Christendat, D.]]
-[[Category: Saridakis, V.]]
-[[Category: Shahinas, D.]]
-[[Category: Xu, X.]]
-[[Category: Dna binding]]
-[[Category: Dna-binding]]
-[[Category: Marr]]
-[[Category: Transcription factor]]
-[[Category: Transcription regulation]]
-[[Category: Transcription regulator]]
-[[Category: Winged helix motif]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 12:55:06 2008''