3bma: Difference between revisions

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-[[Image:3bma.jpg|left|200px]]
- {{Structure
+==Crystal structure of D-alanyl-lipoteichoic acid synthetase from Streptococcus pneumoniae R6==
-|PDB= 3bma |SIZE=350|CAPTION= <scene name='initialview01'>3bma</scene>, resolution 2.24&Aring;
+<StructureSection load='3bma' size='340' side='right'caption='[[3bma]], [[Resolution|resolution]] 2.24&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
+<table><tr><td colspan='2'>[[3bma]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_R6 Streptococcus pneumoniae R6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BMA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BMA FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.24&#8491;</td></tr>
-|GENE= dltD, spr1979 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=171101 Streptococcus pneumoniae R6])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-}}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bma FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bma OCA], [https://pdbe.org/3bma PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bma RCSB], [https://www.ebi.ac.uk/pdbsum/3bma PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bma ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3bma TOPSAN]</span></td></tr>
+</table>
-'''Crystal structure of D-alanyl-lipoteichoic acid synthetase from Streptococcus pneumoniae R6'''
+== Function ==
+[https://www.uniprot.org/uniprot/Q8DN13_STRR6 Q8DN13_STRR6]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-BMA is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae_r6 Streptococcus pneumoniae r6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BMA OCA].
+Check<jmol>
-[[Category: Single protein]]
+  <jmolCheckbox>
-[[Category: Streptococcus pneumoniae r6]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bm/3bma_consurf.spt"</scriptWhenChecked>
-[[Category: Almo, S C.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Bain, K.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Bonanno, J B.]]
+  </jmolCheckbox>
-[[Category: Burley, S K.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bma ConSurf].
-[[Category: Gheyi, T.]]
+<div style="clear:both"></div>
-[[Category: Iizuka, M.]]
+__TOC__
-[[Category: Koss, J.]]
+</StructureSection>
-[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+[[Category: Large Structures]]
-[[Category: Patskovsky, Y.]]
+[[Category: Streptococcus pneumoniae R6]]
-[[Category: Rutter, M.]]
+[[Category: Almo SC]]
-[[Category: Sauder, J M.]]
+[[Category: Bain K]]
-[[Category: Smith, D.]]
+[[Category: Bonanno JB]]
-[[Category: Sridhar, V.]]
+[[Category: Burley SK]]
-[[Category: Wasserman, S R.]]
+[[Category: Gheyi T]]
-[[Category: GOL]]
+[[Category: Iizuka M]]
-[[Category: SO4]]
+[[Category: Koss J]]
-[[Category: d-alanyl-lipoteichoic acid biosynthesis]]
+[[Category: Patskovsky Y]]
-[[Category: ligase]]
+[[Category: Rutter M]]
-[[Category: new york structural genomix research consortium]]
+[[Category: Sauder JM]]
-[[Category: nysgxrc]]
+[[Category: Smith D]]
-[[Category: protein structure initiative]]
+[[Category: Sridhar V]]
-[[Category: psi-2]]
+[[Category: Wasserman SR]]
-[[Category: structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 19:00:01 2008''