3bip: Difference between revisions

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-[[Image:3bip.jpg|left|200px]]
- {{Structure
+==Crystal structure of yeast Spt16 N-terminal Domain==
-|PDB= 3bip |SIZE=350|CAPTION= <scene name='initialview01'>3bip</scene>, resolution 1.940&Aring;
+<StructureSection load='3bip' size='340' side='right'caption='[[3bip]], [[Resolution|resolution]] 1.94&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND=
+<table><tr><td colspan='2'>[[3bip]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BIP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BIP FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.94&#8491;</td></tr>
-|GENE= SPT16, CDC68, SSF1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bip FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bip OCA], [https://pdbe.org/3bip PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bip RCSB], [https://www.ebi.ac.uk/pdbsum/3bip PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bip ProSAT]</span></td></tr>
-|DOMAIN=
+</table>
-|RELATEDENTRY=[[3biq|3BIQ]], [[3bit|3BIT]]
+== Function ==
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bip FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bip OCA], [http://www.ebi.ac.uk/pdbsum/3bip PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3bip RCSB]</span>
+[https://www.uniprot.org/uniprot/SPT16_YEAST SPT16_YEAST]
-}}
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-'''Crystal structure of yeast Spt16 N-terminal Domain'''
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bi/3bip_consurf.spt"</scriptWhenChecked>
-==About this Structure==
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-BIP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BIP OCA].
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bip ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Saccharomyces cerevisiae]]
-[[Category: Single protein]]
+[[Category: Bentley S]]
-[[Category: Bentley, S.]]
+[[Category: David SJ]]
-[[Category: David, S J.]]
+[[Category: Formosa T]]
-[[Category: Formosa, T.]]
+[[Category: Heroux A]]
-[[Category: Heroux, A.]]
+[[Category: Hill CP]]
-[[Category: Hill, C P.]]
+[[Category: McCullough L]]
-[[Category: McCullough, L.]]
+[[Category: Rawlins R]]
-[[Category: Rawlins, R.]]
+[[Category: VanDemark AP]]
-[[Category: VanDemark, A P.]]
+[[Category: Xin H]]
-[[Category: Xin, H.]]
-[[Category: activator]]
-[[Category: aminopeptidase]]
-[[Category: chromatin]]
-[[Category: chromosomal protein]]
-[[Category: coiled coil]]
-[[Category: dna damage]]
-[[Category: dna repair]]
-[[Category: dna replication]]
-[[Category: fact]]
-[[Category: nucleus]]
-[[Category: phosphoprotein]]
-[[Category: pita-bread]]
-[[Category: replication]]
-[[Category: repressor]]
-[[Category: transcription]]
-[[Category: transcription regulation]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:26:43 2008''