2rn2: Difference between revisions
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==STRUCTURAL DETAILS OF RIBONUCLEASE H FROM ESCHERICHIA COLI AS REFINED TO AN ATOMIC RESOLUTION== | |||
<StructureSection load='2rn2' size='340' side='right'caption='[[2rn2]], [[Resolution|resolution]] 1.48Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[2rn2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RN2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RN2 FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.48Å</td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rn2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rn2 OCA], [https://pdbe.org/2rn2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rn2 RCSB], [https://www.ebi.ac.uk/pdbsum/2rn2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rn2 ProSAT]</span></td></tr> | |||
== | </table> | ||
[[2rn2]] is a 1 chain structure with sequence from [ | == Function == | ||
[https://www.uniprot.org/uniprot/RNH_ECOLI RNH_ECOLI] Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. RNase H participates in DNA replication; it helps to specify the origin of genomic replication by suppressing initiation at origins other than the oriC locus; along with the 5'-3' exonuclease of pol1, it removes RNA primers from the Okazaki fragments of lagging strand synthesis; and it defines the origin of replication for ColE1-type plasmids by specific cleavage of an RNA preprimer.[HAMAP-Rule:MF_00042] | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rn/2rn2_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rn2 ConSurf]. | |||
<div style="clear:both"></div> | |||
==See Also== | ==See Also== | ||
*[[Ribonuclease|Ribonuclease]] | *[[Ribonuclease 3D structures|Ribonuclease 3D structures]] | ||
__TOC__ | |||
</StructureSection> | |||
[[Category: Escherichia coli]] | [[Category: Escherichia coli]] | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: Ikehara | [[Category: Ikehara M]] | ||
[[Category: Ishikawa | [[Category: Ishikawa M]] | ||
[[Category: Kanaya | [[Category: Kanaya S]] | ||
[[Category: Katayanagi | [[Category: Katayanagi K]] | ||
[[Category: Matsushima | [[Category: Matsushima M]] | ||
[[Category: Matsuzaki | [[Category: Matsuzaki T]] | ||
[[Category: Miyagawa | [[Category: Miyagawa M]] | ||
[[Category: Morikawa | [[Category: Morikawa K]] | ||
[[Category: Nakamura | [[Category: Nakamura H]] | ||