2r6e: Difference between revisions

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-[[Image:2r6e.jpg|left|200px]]
- {{Structure
+==Crystal Form B2==
-|PDB= 2r6e |SIZE=350|CAPTION= <scene name='initialview01'>2r6e</scene>, resolution 5.019&Aring;
+<StructureSection load='2r6e' size='340' side='right'caption='[[2r6e]], [[Resolution|resolution]] 5.02&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
+<table><tr><td colspan='2'>[[2r6e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R6E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R6E FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 5.019&#8491;</td></tr>
-|GENE= DnaB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1422 Geobacillus stearothermophilus])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-|DOMAIN=
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r6e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r6e OCA], [https://pdbe.org/2r6e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r6e RCSB], [https://www.ebi.ac.uk/pdbsum/2r6e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r6e ProSAT]</span></td></tr>
-|RELATEDENTRY=[[2r6a|2R6A]], [[2r6c|2R6C]], [[2r6d|2R6D]]
+</table>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2r6e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r6e OCA], [http://www.ebi.ac.uk/pdbsum/2r6e PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2r6e RCSB]</span>
+== Function ==
-}}
+[https://www.uniprot.org/uniprot/Q9X4C9_GEOSE Q9X4C9_GEOSE]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r6/2r6e_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r6e ConSurf].
+<div style="clear:both"></div>
-'''Crystal Form B2'''
+==See Also==
+*[[Helicase 3D structures|Helicase 3D structures]]
+__TOC__
-==Overview==
+</StructureSection>
-The complex between the DnaB helicase and the DnaG primase unwinds duplex DNA at the eubacterial replication fork and synthesizes the Okazaki RNA primers. The crystal structures of hexameric DnaB and its complex with the helicase binding domain (HBD) of DnaG reveal that within the hexamer the two domains of DnaB pack with strikingly different symmetries to form a distinct two-layered ring structure. Each of three bound HBDs stabilizes the DnaB hexamer in a conformation that may increase its processivity. Three positive, conserved electrostatic patches on the N-terminal domain of DnaB may also serve as a binding site for DNA and thereby guide the DNA to a DnaG active site.
-==About this Structure==
-R6E is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R6E OCA].
-==Reference==
-Structure of hexameric DnaB helicase and its complex with a domain of DnaG primase., Bailey S, Eliason WK, Steitz TA, Science. 2007 Oct 19;318(5849):459-63. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17947583 17947583]
 [[Category: Geobacillus stearothermophilus]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Bailey, S.]]
+[[Category: Bailey S]]
-[[Category: Eliason, W K.]]
+[[Category: Eliason WK]]
-[[Category: Steitz, T A.]]
+[[Category: Steitz TA]]
-[[Category: helicase]]
-[[Category: hexameric]]
-[[Category: replication dnab]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:56:57 2008''