2qqp: Difference between revisions

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{{Seed}}
[[Image:2qqp.png|left|200px]]


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==Crystal Structure of Authentic Providence Virus==
The line below this paragraph, containing "STRUCTURE_2qqp", creates the "Structure Box" on the page.
<SX load='2qqp' size='340' side='right' viewer='molstar' caption='[[2qqp]], [[Resolution|resolution]] 3.80&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2qqp]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Providence_virus Providence virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QQP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QQP FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.8&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
{{STRUCTURE_2qqp|  PDB=2qqp |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qqp OCA], [https://pdbe.org/2qqp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qqp RCSB], [https://www.ebi.ac.uk/pdbsum/2qqp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qqp ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q80IX5_PRVFL Q80IX5_PRVFL]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qq/2qqp_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qqp ConSurf].
<div style="clear:both"></div>


===Crystal Structure of Authentic Providence Virus===
==See Also==
 
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
 
__TOC__
==About this Structure==
</SX>
2QQP is a 9 chains structure with sequences from [http://en.wikipedia.org/wiki/Providence_virus Providence virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QQP OCA].
[[Category: Large Structures]]
 
==Reference==
<ref group="xtra">PMID:12642108</ref><references group="xtra"/>
[[Category: Providence virus]]
[[Category: Providence virus]]
[[Category: Johnson, J E.]]
[[Category: Johnson JE]]
[[Category: Speir, J A.]]
[[Category: Speir JA]]
[[Category: Taylor, D J.]]
[[Category: Taylor DJ]]
[[Category: Auto proteolysis]]
[[Category: Auto-catalytic cleavage]]
[[Category: Beta barrel]]
[[Category: Capsid]]
[[Category: Coat protein]]
[[Category: Icosahedral virus]]
[[Category: Ig-like domain]]
[[Category: Protein-rna complex]]
[[Category: Quasiequivalence]]
[[Category: Tetraviridae]]
[[Category: Tetravirus]]
[[Category: Virus]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Nov 18 00:18:41 2010''

Latest revision as of 12:17, 21 February 2024

Crystal Structure of Authentic Providence VirusCrystal Structure of Authentic Providence Virus

2qqp, resolution 3.80Å

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