2qmi: Difference between revisions

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[[Image:2qmi.png|left|200px]]


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==Structure of the octameric penicillin-binding protein homologue from Pyrococcus abyssi==
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<StructureSection load='2qmi' size='340' side='right'caption='[[2qmi]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2qmi]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_abyssi Pyrococcus abyssi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QMI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QMI FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DO3:10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE+1,4,7-TRIACETIC+ACID'>DO3</scene>, <scene name='pdbligand=LU:LUTETIUM+(III)+ION'>LU</scene></td></tr>
{{STRUCTURE_2qmi|  PDB=2qmi  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qmi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qmi OCA], [https://pdbe.org/2qmi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qmi RCSB], [https://www.ebi.ac.uk/pdbsum/2qmi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qmi ProSAT]</span></td></tr>
 
</table>
===Structure of the octameric penicillin-binding protein homologue from Pyrococcus abyssi===
== Function ==
 
[https://www.uniprot.org/uniprot/Q9V2D6_PYRAB Q9V2D6_PYRAB]
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qm/2qmi_consurf.spt"</scriptWhenChecked>
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    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
2QMI is a 8 chains structure of sequences from [http://en.wikipedia.org/wiki/Pyrococcus_abyssi Pyrococcus abyssi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QMI OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qmi ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
<ref group="xtra">PMID:19266066</ref><references group="xtra"/>
</StructureSection>
[[Category: Beta-lactamase]]
[[Category: Large Structures]]
[[Category: Pyrococcus abyssi]]
[[Category: Pyrococcus abyssi]]
[[Category: Delfosse, V.]]
[[Category: Delfosse V]]
[[Category: Girard, E.]]
[[Category: Girard E]]
[[Category: Mayer, C.]]
[[Category: Mayer C]]
[[Category: Moulinier, L.]]
[[Category: Moulinier L]]
[[Category: Schultz, P.]]
[[Category: Schultz P]]
[[Category: Archaea]]
[[Category: Hydrolase]]
[[Category: Lu-hpdo3a]]
[[Category: Octamer]]
[[Category: Pab87]]
[[Category: Pbp]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jun 25 08:27:46 2009''

Latest revision as of 12:16, 21 February 2024

Structure of the octameric penicillin-binding protein homologue from Pyrococcus abyssiStructure of the octameric penicillin-binding protein homologue from Pyrococcus abyssi

Structural highlights

2qmi is a 8 chain structure with sequence from Pyrococcus abyssi. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.2Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q9V2D6_PYRAB

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2qmi, resolution 2.20Å

Drag the structure with the mouse to rotate

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OCA
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