2qmi: Difference between revisions

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-{{Seed}}
-[[Image:2qmi.png|left|200px]]
-<!--
+==Structure of the octameric penicillin-binding protein homologue from Pyrococcus abyssi==
-The line below this paragraph, containing "STRUCTURE_2qmi", creates the "Structure Box" on the page.
+<StructureSection load='2qmi' size='340' side='right'caption='[[2qmi]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2qmi]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_abyssi Pyrococcus abyssi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QMI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QMI FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DO3:10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE+1,4,7-TRIACETIC+ACID'>DO3</scene>, <scene name='pdbligand=LU:LUTETIUM+(III)+ION'>LU</scene></td></tr>
-{{STRUCTURE_2qmi|  PDB=2qmi  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qmi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qmi OCA], [https://pdbe.org/2qmi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qmi RCSB], [https://www.ebi.ac.uk/pdbsum/2qmi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qmi ProSAT]</span></td></tr>
+</table>
-===Structure of the octameric penicillin-binding protein homologue from Pyrococcus abyssi===
+== Function ==
+[https://www.uniprot.org/uniprot/Q9V2D6_PYRAB Q9V2D6_PYRAB]
+== Evolutionary Conservation ==
-<!--
+[[Image:Consurf_key_small.gif|200px|right]]
-The line below this paragraph, {{ABSTRACT_PUBMED_19266066}}, adds the Publication Abstract to the page
+Check<jmol>
-(as it appears on PubMed at http://www.pubmed.gov), where 19266066 is the PubMed ID number.
+  <jmolCheckbox>
--->
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qm/2qmi_consurf.spt"</scriptWhenChecked>
-{{ABSTRACT_PUBMED_19266066}}
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-==About this Structure==
+  </jmolCheckbox>
-QMI is a 8 chains structure of sequences from [http://en.wikipedia.org/wiki/Pyrococcus_abyssi Pyrococcus abyssi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QMI OCA].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qmi ConSurf].
+<div style="clear:both"></div>
-==Reference==
+__TOC__
-<ref group="xtra">PMID:19266066</ref><references group="xtra"/>
+</StructureSection>
-[[Category: Beta-lactamase]]
+[[Category: Large Structures]]
 [[Category: Pyrococcus abyssi]]
-[[Category: Delfosse, V.]]
+[[Category: Delfosse V]]
-[[Category: Girard, E.]]
+[[Category: Girard E]]
-[[Category: Mayer, C.]]
+[[Category: Mayer C]]
-[[Category: Moulinier, L.]]
+[[Category: Moulinier L]]
-[[Category: Schultz, P.]]
+[[Category: Schultz P]]
-[[Category: Archaea]]
-[[Category: Hydrolase]]
-[[Category: Lu-hpdo3a]]
-[[Category: Octamer]]
-[[Category: Pab87]]
-[[Category: Pbp]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 17 09:11:38 2009''