2qdk: Difference between revisions

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[[Image:2qdk.jpg|left|200px]]


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==X-ray structure of the unliganded uridine phosphorylase from Salmonella typhimurium at 1.62A resolution==
The line below this paragraph, containing "STRUCTURE_2qdk", creates the "Structure Box" on the page.
<StructureSection load='2qdk' size='340' side='right'caption='[[2qdk]], [[Resolution|resolution]] 1.62&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2qdk]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QDK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QDK FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.62&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qdk OCA], [https://pdbe.org/2qdk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qdk RCSB], [https://www.ebi.ac.uk/pdbsum/2qdk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qdk ProSAT]</span></td></tr>
{{STRUCTURE_2qdk| PDB=2qdk |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/UDP_SALTY UDP_SALTY] Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qd/2qdk_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qdk ConSurf].
<div style="clear:both"></div>


===X-ray structure of the unliganded uridine phosphorylase from Salmonella typhimurium at 1.62A resolution===
==See Also==
 
*[[Uridine phosphorylase 3D structures|Uridine phosphorylase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
2QDK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QDK OCA].
[[Category: Large Structures]]
[[Category: Salmonella typhimurium]]
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]]
[[Category: Single protein]]
[[Category: Gabdoulkhakov AG]]
[[Category: Uridine phosphorylase]]
[[Category: Lashkov AA]]
[[Category: Gabdoulkhakov, A G.]]
[[Category: Mikhailov AM]]
[[Category: Lashkov, A A.]]
[[Category: Pavlyuk BP]]
[[Category: Mikhailov, A M.]]
[[Category: Timofeev VI]]
[[Category: Pavlyuk, B P.]]
[[Category: Timofeev, V I.]]
[[Category: Nucleoside phosphorylase]]
[[Category: Transferase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jul  3 11:19:17 2008''

Latest revision as of 12:15, 21 February 2024

X-ray structure of the unliganded uridine phosphorylase from Salmonella typhimurium at 1.62A resolutionX-ray structure of the unliganded uridine phosphorylase from Salmonella typhimurium at 1.62A resolution

Structural highlights

2qdk is a 6 chain structure with sequence from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.62Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

UDP_SALTY Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2qdk, resolution 1.62Å

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