2py8: Difference between revisions

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-{{Seed}}
-[[Image:2py8.png|left|200px]]
-<!--
+==RbcX==
-The line below this paragraph, containing "STRUCTURE_2py8", creates the "Structure Box" on the page.
+<StructureSection load='2py8' size='340' side='right'caption='[[2py8]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2py8]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechocystis_sp._PCC_6803 Synechocystis sp. PCC 6803]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PY8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PY8 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PE4:2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL'>PE4</scene></td></tr>
-{{STRUCTURE_2py8|  PDB=2py8  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2py8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2py8 OCA], [https://pdbe.org/2py8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2py8 RCSB], [https://www.ebi.ac.uk/pdbsum/2py8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2py8 ProSAT]</span></td></tr>
+</table>
-===RbcX===
+== Function ==
+[https://www.uniprot.org/uniprot/RBCX_SYNY3 RBCX_SYNY3] An RbcL-specific chaperone. The central cleft of the RbcX homodimer (RbcX2) binds the C-terminus of an RbcL monomer, stabilizing the C-terminus and probably preventing its reassociation with chaperonin GroEL-ES. At the same time the peripheral region of RbcX2 binds a second RbcL monomer, bridging the RbcL homodimers in the correct orientation. The RbcX2(2)-bound RbcL dimers then assemble into the RbcL8 core (RbcL8-(RbcX2)8). RbcS binding triggers the release of RbcX2.[HAMAP-Rule:MF_00855]
+== Evolutionary Conservation ==
-<!--
+[[Image:Consurf_key_small.gif|200px|right]]
-The line below this paragraph, {{ABSTRACT_PUBMED_17881829}}, adds the Publication Abstract to the page
+Check<jmol>
-(as it appears on PubMed at http://www.pubmed.gov), where 17881829 is the PubMed ID number.
+  <jmolCheckbox>
--->
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/py/2py8_consurf.spt"</scriptWhenChecked>
-{{ABSTRACT_PUBMED_17881829}}
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-==About this Structure==
+  </jmolCheckbox>
-PY8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PY8 OCA].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2py8 ConSurf].
+<div style="clear:both"></div>
-==Reference==
+__TOC__
-Structure of the RuBisCO chaperone RbcX from Synechocystis sp. PCC6803., Tanaka S, Sawaya MR, Kerfeld CA, Yeates TO, Acta Crystallogr D Biol Crystallogr. 2007 Oct;63(Pt 10):1109-12. Epub 2007, Sep 19. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17881829 17881829]
+</StructureSection>
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Synechocystis sp.]]
+[[Category: Synechocystis sp. PCC 6803]]
-[[Category: Kerfeld, C A.]]
+[[Category: Kerfeld CA]]
-[[Category: Sawaya, M R.]]
+[[Category: Sawaya MR]]
-[[Category: Tanaka, S.]]
+[[Category: Tanaka S]]
-[[Category: Yeates, T O.]]
+[[Category: Yeates TO]]
-[[Category: All helical fold]]
-[[Category: Chaperone]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 07:09:38 2008''