2pk2: Difference between revisions

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-{{Seed}}
-[[Image:2pk2.png|left|200px]]
-<!--
+==Cyclin box structure of the P-TEFb subunit Cyclin T1 derived from a fusion complex with EIAV Tat==
-The line below this paragraph, containing "STRUCTURE_2pk2", creates the "Structure Box" on the page.
+<StructureSection load='2pk2' size='340' side='right'caption='[[2pk2]], [[Resolution|resolution]] 2.67&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2pk2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Equine_infectious_anemia_virus Equine infectious anemia virus] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PK2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PK2 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.67&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pk2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pk2 OCA], [https://pdbe.org/2pk2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pk2 RCSB], [https://www.ebi.ac.uk/pdbsum/2pk2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pk2 ProSAT]</span></td></tr>
-{{STRUCTURE_2pk2|  PDB=2pk2  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/TAT_EIAVC TAT_EIAVC] Nuclear transcriptional activator of viral gene expression, that is essential for viral transcription from the LTR promoter and replication. Acts as a sequence-specific molecular adapter, directing components of the cellular transcription machinery to the viral RNA to enhance transcription by the RNA polymerase II (RNA pol II) complex, thereby increasing the level of full-length transcripts. Tat associates with the CCNT1/cyclin-T1 component of the P-TEFb complex (CDK9 and CCNT1), which promotes RNA chain elongation. This binding increases Tat's affinity for a branched hairpin structure at the 5'-end of all nascent viral mRNAs referred to as the transactivation responsive RNA element (TAR RNA). The CDK9 component of P-TEFb hyperphosphorylates the C-terminus of RNA Pol II that becomes stabilized and much more processive (By similarity).[https://www.uniprot.org/uniprot/CCNT1_HUMAN CCNT1_HUMAN] Regulatory subunit of the cyclin-dependent kinase pair (CDK9/cyclin-T1) complex, also called positive transcription elongation factor B (P-TEFb), which is proposed to facilitate the transition from abortive to productive elongation by phosphorylating the CTD (carboxy-terminal domain) of the large subunit of RNA polymerase II (RNA Pol II). In case of HIV or SIV infections, binds to the transactivation domain of the viral nuclear transcriptional activator, Tat, thereby increasing Tat's affinity for the transactivating response RNA element (TAR RNA). Serves as an essential cofactor for Tat, by promoting RNA Pol II activation, allowing transcription of viral genes.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pk/2pk2_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pk2 ConSurf].
+<div style="clear:both"></div>
-===Cyclin box structure of the P-TEFb subunit Cyclin T1 derived from a fusion complex with EIAV Tat===
+==See Also==
+*[[Tat protein|Tat protein]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_17540406}}, adds the Publication Abstract to the page
+[[Category: Equine infectious anemia virus]]
-(as it appears on PubMed at http://www.pubmed.gov), where 17540406 is the PubMed ID number.
+[[Category: Homo sapiens]]
--->
+[[Category: Large Structures]]
-{{ABSTRACT_PUBMED_17540406}}
+[[Category: Anand K]]
+[[Category: Fujinaga K]]
-==About this Structure==
+[[Category: Geyer M]]
-PK2 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens,_equine_infectious_anemia_virus Homo sapiens, equine infectious anemia virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PK2 OCA].
+[[Category: Scheffzek K]]
+[[Category: Schulte A]]
-==Reference==
-<ref group="xtra">PMID:17540406</ref><references group="xtra"/>
-[[Category: Homo sapiens, equine infectious anemia virus]]
-[[Category: Anand, K.]]
-[[Category: Fujinaga, K.]]
-[[Category: Geyer, M.]]
-[[Category: Scheffzek, K.]]
-[[Category: Schulte, A.]]
-[[Category: Cyclin t1]]
-[[Category: Tar]]
-[[Category: Tat]]
-[[Category: Transcription regulation p-tefb]]
-[[Category: Twinning]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 02:53:32 2009''