2pag: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:2pag.jpg|left|200px]]<br /><applet load="2pag" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2pag, resolution 1.60&Aring;" />
-'''Crystal structure of protein PSPTO_5518 from Pseudomonas syringae pv. tomato'''<br />
-==About this Structure==
+==Crystal structure of protein PSPTO_5518 from Pseudomonas syringae pv. tomato==
-PAG is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato Pseudomonas syringae pv. tomato] with <scene name='pdbligand=CA:'>CA</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PAG OCA].
+<StructureSection load='2pag' size='340' side='right'caption='[[2pag]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-[[Category: Pseudomonas syringae pv. tomato]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[2pag]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato_str._DC3000 Pseudomonas syringae pv. tomato str. DC3000]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PAG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PAG FirstGlance]. <br>
-[[Category: Almo, S.C.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-[[Category: Burley, S.K.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-[[Category: Fedorov, A.A.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pag FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pag OCA], [https://pdbe.org/2pag PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pag RCSB], [https://www.ebi.ac.uk/pdbsum/2pag PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pag ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2pag TOPSAN]</span></td></tr>
-[[Category: Fedorov, E.V.]]
+</table>
-[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
+== Function ==
-[[Category: Ramagopal, U.]]
+[https://www.uniprot.org/uniprot/Q87TZ9_PSESM Q87TZ9_PSESM]
-[[Category: Sauder, J.M.]]
+== Evolutionary Conservation ==
-[[Category: Toro, R.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: CA]]
+Check<jmol>
-[[Category: new york structural genomix research consortium]]
+  <jmolCheckbox>
-[[Category: novel fold]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pa/2pag_consurf.spt"</scriptWhenChecked>
-[[Category: nysgx]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: nysgxrc]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: protein structure initiative]]
+  </jmolCheckbox>
-[[Category: psi-2]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pag ConSurf].
-[[Category: structural genomics]]
+<div style="clear:both"></div>
-[[Category: target 10412i]]
+__TOC__
+</StructureSection>
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 21:21:45 2008''
+[[Category: Large Structures]]
+[[Category: Pseudomonas syringae pv. tomato str. DC3000]]
+[[Category: Almo SC]]
+[[Category: Burley SK]]
+[[Category: Fedorov AA]]
+[[Category: Fedorov EV]]
+[[Category: Ramagopal U]]
+[[Category: Sauder JM]]
+[[Category: Toro R]]