2oyn: Difference between revisions

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-[[Image:2oyn.jpg|left|200px]]
-<!--
+==Crystal structure of CDP-bound protein MJ0056 from Methanococcus jannaschii, Pfam DUF120==
-The line below this paragraph, containing "STRUCTURE_2oyn", creates the "Structure Box" on the page.
+<StructureSection load='2oyn' size='340' side='right'caption='[[2oyn]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2oyn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii_DSM_2661 Methanocaldococcus jannaschii DSM 2661]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OYN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OYN FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CDP:CYTIDINE-5-DIPHOSPHATE'>CDP</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-{{STRUCTURE_2oyn|  PDB=2oyn  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oyn OCA], [https://pdbe.org/2oyn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oyn RCSB], [https://www.ebi.ac.uk/pdbsum/2oyn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oyn ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2oyn TOPSAN]</span></td></tr>
+</table>
-'''Crystal structure of CDP-bound protein MJ0056 from Methanococcus jannaschii, Pfam DUF120'''
+== Function ==
+[https://www.uniprot.org/uniprot/RIFK_METJA RIFK_METJA] Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN). Can also utilize UTP as the phosphate donor, although less efficiently, and it is unclear if ATP and GTP can also serve as substrates (PubMed:18245297) or not (PubMed:18073108).<ref>PMID:18073108</ref> <ref>PMID:18245297</ref>
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-OYN is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OYN OCA].
+Check<jmol>
-[[Category: Methanocaldococcus jannaschii]]
+  <jmolCheckbox>
-[[Category: Single protein]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oy/2oyn_consurf.spt"</scriptWhenChecked>
-[[Category: Almo, S C.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Bain, K T.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Bonanno, J B.]]
+  </jmolCheckbox>
-[[Category: Burley, S K.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oyn ConSurf].
-[[Category: Dickey, M.]]
+<div style="clear:both"></div>
-[[Category: Lau, C.]]
+== References ==
-[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+<references/>
-[[Category: Romero, R.]]
+__TOC__
-[[Category: Sauder, M J.]]
+</StructureSection>
-[[Category: Smith, D.]]
+[[Category: Large Structures]]
-[[Category: Wasserman, S.]]
+[[Category: Methanocaldococcus jannaschii DSM 2661]]
-[[Category: New york structural genomix research consortium]]
+[[Category: Almo SC]]
-[[Category: Nysgxrc]]
+[[Category: Bain KT]]
-[[Category: Protein structure initiative]]
+[[Category: Bonanno JB]]
-[[Category: Psi-2]]
+[[Category: Burley SK]]
-[[Category: Structural genomic]]
+[[Category: Dickey M]]
-[[Category: Unknown function]]
+[[Category: Lau C]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 11:56:35 2008''
+[[Category: Romero R]]
+[[Category: Sauder JM]]
+[[Category: Smith D]]
+[[Category: Wasserman S]]