2izf: Difference between revisions

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New page: left|200px<br /><applet load="2izf" size="450" color="white" frame="true" align="right" spinBox="true" caption="2izf, resolution 1.58Å" /> '''STREPTAVIDIN-BIOTIN ...
 
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[[Image:2izf.gif|left|200px]]<br /><applet load="2izf" size="450" color="white" frame="true" align="right" spinBox="true"
caption="2izf, resolution 1.58&Aring;" />
'''STREPTAVIDIN-BIOTIN PH 4.0 I222 COMPLEX'''<br />


==Overview==
==STREPTAVIDIN-BIOTIN PH 4.0 I222 COMPLEX==
The remarkable stability of the streptavidin tetramer towards subunit, dissociation becomes even greater upon binding of biotin. At two, equivalent extensive monomer-monomer interfaces, monomers tightly, associate into dimers that in turn associate into the tetramer at a less, extensive dimer-dimer interface. To probe the structural basis for the, enhancement of the stability of streptavidin by biotin, the crystal, structures of apostreptavidin and its complexes with biotin and other, small molecule and cyclic peptide ligands were determined and compared at, resolutions as high as 1.36 A over a range of pH values from as low as, 1.39. At low pH dramatic changes occur in the conformation and, intersubunit hydrogen bonds involving the loop comprising Asp61 to Ser69., The hydrogen-bonded salt bridge between Asp61 Odelta2 and His87 Ndelta1, observed at higher pH, is replaced with a strong hydrogen bond between, Asp61 Odelta1 and Asn85 Odelta1. Through crystallography at multiple pH, values, the pH where this conformational change occurs, and thus the pKa, of Asp61, was determined in crystals of space group I222 and/or I4122 of, apostreptavidin and complexes. A range in pKa values for Asp61 was, observed in these structures, the lowest being 1.78+/-0.19 for I222, streptavidin-biotin in 2.9 M (NH4)2SO4. At low pH the decrease in pKa of, Asp61 and preservation of the intersubunit Asp61 Odelta2-Ndelta1 His87, hydrogen-bonded salt bridge in streptavidin-biotin versus apostreptavidin, or streptavidin-peptide complexes is associated with an ordering of the, flexible flap comprising residues Ala46 to Glu51, that in turn orders the, Arg84 side-chain of a neighboring loop through resulting hydrogen bonds., Ordering of Arg84 in close proximity to the strong intersubunit interface, appears to stabilize the conformation associated with the Asp61, Odelta2-Ndelta1 His87 hydrogen-bonded salt bridge. Thus, in addition to, the established role of biotin in tetramer stabilization by direct, mediation of intersubunit interactions at the weak interface through, contact with Trp120, biotin may enhance tetramer stability at the strong, interface more indirectly by ordering loop residues.
<StructureSection load='2izf' size='340' side='right'caption='[[2izf]], [[Resolution|resolution]] 1.58&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[2izf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_avidinii Streptomyces avidinii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IZF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IZF FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.58&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BTN:BIOTIN'>BTN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2izf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2izf OCA], [https://pdbe.org/2izf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2izf RCSB], [https://www.ebi.ac.uk/pdbsum/2izf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2izf ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/SAV_STRAV SAV_STRAV] The biological function of streptavidin is not known. Forms a strong non-covalent specific complex with biotin (one molecule of biotin per subunit of streptavidin).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iz/2izf_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2izf ConSurf].
<div style="clear:both"></div>


==About this Structure==
==See Also==
2IZF is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_avidinii Streptomyces avidinii] with SO4 and BTN as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2IZF OCA].
*[[Avidin 3D structures|Avidin 3D structures]]
 
__TOC__
==Reference==
</StructureSection>
Binding of biotin to streptavidin stabilizes intersubunit salt bridges between Asp61 and His87 at low pH., Katz BA, J Mol Biol. 1997 Dec 19;274(5):776-800. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9405158 9405158]
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Streptomyces avidinii]]
[[Category: Streptomyces avidinii]]
[[Category: Katz, B.A.]]
[[Category: Katz BA]]
[[Category: BTN]]
[[Category: SO4]]
[[Category: biotin-binding protein]]
[[Category: streptavidin-biotin]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 12:28:42 2007''

Latest revision as of 12:04, 21 February 2024

STREPTAVIDIN-BIOTIN PH 4.0 I222 COMPLEXSTREPTAVIDIN-BIOTIN PH 4.0 I222 COMPLEX

Structural highlights

2izf is a 2 chain structure with sequence from Streptomyces avidinii. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.58Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

SAV_STRAV The biological function of streptavidin is not known. Forms a strong non-covalent specific complex with biotin (one molecule of biotin per subunit of streptavidin).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2izf, resolution 1.58Å

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