2im5: Difference between revisions

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[[Image:2im5.png|left|200px]]


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==Crystal structure of Nicotinate phosphoribosyltransferase from Porphyromonas Gingivalis==
The line below this paragraph, containing "STRUCTURE_2im5", creates the "Structure Box" on the page.
<StructureSection load='2im5' size='340' side='right'caption='[[2im5]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2im5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IM5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IM5 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2im5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2im5 OCA], [https://pdbe.org/2im5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2im5 RCSB], [https://www.ebi.ac.uk/pdbsum/2im5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2im5 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2im5 TOPSAN]</span></td></tr>
{{STRUCTURE_2im5| PDB=2im5 |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q7MXV0_PORGI Q7MXV0_PORGI] Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP.[HAMAP-Rule:MF_00570]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/im/2im5_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2im5 ConSurf].
<div style="clear:both"></div>


===Crystal structure of Nicotinate phosphoribosyltransferase from Porphyromonas Gingivalis===
==See Also==
 
*[[Phosphoribosyltransferase 3D structures|Phosphoribosyltransferase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
2IM5 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IM5 OCA].
[[Category: Large Structures]]
[[Category: Porphyromonas gingivalis]]
[[Category: Porphyromonas gingivalis]]
[[Category: Almo, S C.]]
[[Category: Almo SC]]
[[Category: Burley, S K.]]
[[Category: Burley SK]]
[[Category: Fedorov, A A.]]
[[Category: Fedorov AA]]
[[Category: Fedorov, E V.]]
[[Category: Fedorov EV]]
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
[[Category: Sauder JM]]
[[Category: Sauder, J M.]]
[[Category: New york structural genomix research consortium]]
[[Category: Nysgxrc]]
[[Category: Phosphoribosyltransferase]]
[[Category: Protein structure initiative]]
[[Category: Psi]]
[[Category: Structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 14:58:38 2008''

Latest revision as of 12:03, 21 February 2024

Crystal structure of Nicotinate phosphoribosyltransferase from Porphyromonas GingivalisCrystal structure of Nicotinate phosphoribosyltransferase from Porphyromonas Gingivalis

Structural highlights

2im5 is a 4 chain structure with sequence from Porphyromonas gingivalis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.2Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q7MXV0_PORGI Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP.[HAMAP-Rule:MF_00570]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2im5, resolution 2.20Å

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OCA
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