2i5r: Difference between revisions

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[[Image:2i5r.png|left|200px]]


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==Structure of small Toprim domain-containing protein from B. stearothermophilus in complex with Mg2+==
The line below this paragraph, containing "STRUCTURE_2i5r", creates the "Structure Box" on the page.
<StructureSection load='2i5r' size='340' side='right'caption='[[2i5r]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2i5r]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I5R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I5R FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_2i5r|  PDB=2i5r  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i5r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i5r OCA], [https://pdbe.org/2i5r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i5r RCSB], [https://www.ebi.ac.uk/pdbsum/2i5r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i5r ProSAT], [https://www.topsan.org/Proteins/MCSG/2i5r TOPSAN]</span></td></tr>
 
</table>
===Structure of small Toprim domain-containing protein from B. stearothermophilus in complex with Mg2+===
== Function ==
 
[https://www.uniprot.org/uniprot/Q5KVJ9_GEOKA Q5KVJ9_GEOKA]
 
== Evolutionary Conservation ==
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i5/2i5r_consurf.spt"</scriptWhenChecked>
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    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
[[2i5r]] is a 3 chain structure of [[TOPRIM domain protein]] with sequence from [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I5R OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2i5r ConSurf].
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==See Also==
==See Also==
*[[TOPRIM domain protein|TOPRIM domain protein]]
*[[TOPRIM domain protein|TOPRIM domain protein]]
 
__TOC__
==Reference==
</StructureSection>
<ref group="xtra">PMID:017705269</ref><references group="xtra"/>
[[Category: Geobacillus stearothermophilus]]
[[Category: Geobacillus stearothermophilus]]
[[Category: Borek, D.]]
[[Category: Large Structures]]
[[Category: Joachimiak, A.]]
[[Category: Borek D]]
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Joachimiak A]]
[[Category: Moy, S F.]]
[[Category: Moy SF]]
[[Category: Otwinowski, Z.]]
[[Category: Otwinowski Z]]
[[Category: Rezacova, P.]]
[[Category: Rezacova P]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Structural genomic]]
[[Category: Toprim domain]]
[[Category: Unknown function]]

Latest revision as of 12:01, 21 February 2024

Structure of small Toprim domain-containing protein from B. stearothermophilus in complex with Mg2+Structure of small Toprim domain-containing protein from B. stearothermophilus in complex with Mg2+

Structural highlights

2i5r is a 3 chain structure with sequence from Geobacillus stearothermophilus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.65Å
Ligands:, , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q5KVJ9_GEOKA

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2i5r, resolution 1.65Å

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