2i52: Difference between revisions

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[[Image:2i52.png|left|200px]]


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==Crystal structure of protein PTO0218 from Picrophilus torridus, Pfam DUF372==
The line below this paragraph, containing "STRUCTURE_2i52", creates the "Structure Box" on the page.
<StructureSection load='2i52' size='340' side='right'caption='[[2i52]], [[Resolution|resolution]] 2.08&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2i52]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Picrophilus_torridus_DSM_9790 Picrophilus torridus DSM 9790]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I52 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I52 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.08&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
{{STRUCTURE_2i52|  PDB=2i52  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i52 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i52 OCA], [https://pdbe.org/2i52 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i52 RCSB], [https://www.ebi.ac.uk/pdbsum/2i52 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i52 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2i52 TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of protein PTO0218 from Picrophilus torridus, Pfam DUF372===
== Function ==
 
[https://www.uniprot.org/uniprot/MPTD_PICTO MPTD_PICTO] Catalyzes the conversion of 7,8-dihydroneopterin (H2Neo) to 6-hydroxymethyl-7,8-dihydropterin (6-HMD).[HAMAP-Rule:MF_02130]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2I52 is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Picrophilus_torridus Picrophilus torridus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I52 OCA].  
Check<jmol>
[[Category: Picrophilus torridus]]
  <jmolCheckbox>
[[Category: Almo, S C.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i5/2i52_consurf.spt"</scriptWhenChecked>
[[Category: Bain, K T.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Burley, S K.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Gilmore, J.]]
  </jmolCheckbox>
[[Category: McKenzie, C.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2i52 ConSurf].
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
<div style="clear:both"></div>
[[Category: Ramagopal, U A.]]
__TOC__
[[Category: Reyes, C.]]
</StructureSection>
[[Category: Sauder, J M.]]
[[Category: Large Structures]]
[[Category: Toro, R.]]
[[Category: Picrophilus torridus DSM 9790]]
[[Category: New york structural genomix research consortium]]
[[Category: Almo SC]]
[[Category: Nysgxrc]]
[[Category: Bain KT]]
[[Category: Protein structure initiative]]
[[Category: Burley SK]]
[[Category: Psi]]
[[Category: Gilmore J]]
[[Category: Structural genomic]]
[[Category: McKenzie C]]
[[Category: Unknown function]]
[[Category: Ramagopal UA]]
 
[[Category: Reyes C]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 14:41:52 2008''
[[Category: Sauder JM]]
[[Category: Toro R]]

Latest revision as of 12:01, 21 February 2024

Crystal structure of protein PTO0218 from Picrophilus torridus, Pfam DUF372Crystal structure of protein PTO0218 from Picrophilus torridus, Pfam DUF372

Structural highlights

2i52 is a 6 chain structure with sequence from Picrophilus torridus DSM 9790. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.08Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

MPTD_PICTO Catalyzes the conversion of 7,8-dihydroneopterin (H2Neo) to 6-hydroxymethyl-7,8-dihydropterin (6-HMD).[HAMAP-Rule:MF_02130]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2i52, resolution 2.08Å

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