2i52: Difference between revisions

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-[[Image:2i52.gif|left|200px]]<br /><applet load="2i52" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2i52, resolution 2.080&Aring;" />
-'''Crystal structure of protein PTO0218 from Picrophilus torridus, Pfam DUF372'''<br />
-==About this Structure==
+==Crystal structure of protein PTO0218 from Picrophilus torridus, Pfam DUF372==
-I52 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Picrophilus_torridus Picrophilus torridus] with <scene name='pdbligand=CA:'>CA</scene>, <scene name='pdbligand=CL:'>CL</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I52 OCA].
+<StructureSection load='2i52' size='340' side='right'caption='[[2i52]], [[Resolution|resolution]] 2.08&Aring;' scene=''>
-[[Category: Picrophilus torridus]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[2i52]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Picrophilus_torridus_DSM_9790 Picrophilus torridus DSM 9790]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I52 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I52 FirstGlance]. <br>
-[[Category: Almo, S C.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.08&#8491;</td></tr>
-[[Category: Bain, K T.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-[[Category: Burley, S K.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i52 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i52 OCA], [https://pdbe.org/2i52 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i52 RCSB], [https://www.ebi.ac.uk/pdbsum/2i52 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i52 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2i52 TOPSAN]</span></td></tr>
-[[Category: Gilmore, J.]]
+</table>
-[[Category: McKenzie, C.]]
+== Function ==
-[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+[https://www.uniprot.org/uniprot/MPTD_PICTO MPTD_PICTO] Catalyzes the conversion of 7,8-dihydroneopterin (H2Neo) to 6-hydroxymethyl-7,8-dihydropterin (6-HMD).[HAMAP-Rule:MF_02130]
-[[Category: Ramagopal, U A.]]
+== Evolutionary Conservation ==
-[[Category: Reyes, C.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Sauder, J M.]]
+Check<jmol>
-[[Category: Toro, R.]]
+  <jmolCheckbox>
-[[Category: CA]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i5/2i52_consurf.spt"</scriptWhenChecked>
-[[Category: CL]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: GOL]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: new york structural genomix research consortium]]
+  </jmolCheckbox>
-[[Category: nysgxrc]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2i52 ConSurf].
-[[Category: protein structure initiative]]
+<div style="clear:both"></div>
-[[Category: psi]]
+__TOC__
-[[Category: structural genomics]]
+</StructureSection>
-[[Category: unknown function]]
+[[Category: Large Structures]]
+[[Category: Picrophilus torridus DSM 9790]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:49:10 2008''
+[[Category: Almo SC]]
+[[Category: Bain KT]]
+[[Category: Burley SK]]
+[[Category: Gilmore J]]
+[[Category: McKenzie C]]
+[[Category: Ramagopal UA]]
+[[Category: Reyes C]]
+[[Category: Sauder JM]]
+[[Category: Toro R]]