2i52: Difference between revisions

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[[Image:2i52.png|left|200px]]


{{STRUCTURE_2i52|  PDB=2i52  |  SCENE=  }}
==Crystal structure of protein PTO0218 from Picrophilus torridus, Pfam DUF372==
 
<StructureSection load='2i52' size='340' side='right'caption='[[2i52]], [[Resolution|resolution]] 2.08&Aring;' scene=''>
===Crystal structure of protein PTO0218 from Picrophilus torridus, Pfam DUF372===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[2i52]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Picrophilus_torridus_DSM_9790 Picrophilus torridus DSM 9790]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I52 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I52 FirstGlance]. <br>
 
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.08&#8491;</td></tr>
==About this Structure==
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
[[2i52]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Picrophilus_torridus Picrophilus torridus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I52 OCA].  
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i52 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i52 OCA], [https://pdbe.org/2i52 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i52 RCSB], [https://www.ebi.ac.uk/pdbsum/2i52 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i52 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2i52 TOPSAN]</span></td></tr>
[[Category: Picrophilus torridus]]
</table>
[[Category: Almo, S C.]]
== Function ==
[[Category: Bain, K T.]]
[https://www.uniprot.org/uniprot/MPTD_PICTO MPTD_PICTO] Catalyzes the conversion of 7,8-dihydroneopterin (H2Neo) to 6-hydroxymethyl-7,8-dihydropterin (6-HMD).[HAMAP-Rule:MF_02130]
[[Category: Burley, S K.]]
== Evolutionary Conservation ==
[[Category: Gilmore, J.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: McKenzie, C.]]
Check<jmol>
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
  <jmolCheckbox>
[[Category: Ramagopal, U A.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i5/2i52_consurf.spt"</scriptWhenChecked>
[[Category: Reyes, C.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Sauder, J M.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Toro, R.]]
  </jmolCheckbox>
[[Category: New york sgx research center for structural genomic]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2i52 ConSurf].
[[Category: Nysgxrc]]
<div style="clear:both"></div>
[[Category: Protein structure initiative]]
__TOC__
[[Category: Psi]]
</StructureSection>
[[Category: Structural genomic]]
[[Category: Large Structures]]
[[Category: Unknown function]]
[[Category: Picrophilus torridus DSM 9790]]
[[Category: Almo SC]]
[[Category: Bain KT]]
[[Category: Burley SK]]
[[Category: Gilmore J]]
[[Category: McKenzie C]]
[[Category: Ramagopal UA]]
[[Category: Reyes C]]
[[Category: Sauder JM]]
[[Category: Toro R]]

Latest revision as of 12:01, 21 February 2024

Crystal structure of protein PTO0218 from Picrophilus torridus, Pfam DUF372Crystal structure of protein PTO0218 from Picrophilus torridus, Pfam DUF372

Structural highlights

2i52 is a 6 chain structure with sequence from Picrophilus torridus DSM 9790. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.08Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

MPTD_PICTO Catalyzes the conversion of 7,8-dihydroneopterin (H2Neo) to 6-hydroxymethyl-7,8-dihydropterin (6-HMD).[HAMAP-Rule:MF_02130]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2i52, resolution 2.08Å

Drag the structure with the mouse to rotate

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OCA
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