3axk: Difference between revisions

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-{{STRUCTURE_3axk|  PDB=3axk  |  SCENE=  }}
-===Structure of rice Rubisco in complex with NADP(H)===
-{{ABSTRACT_PUBMED_22609438}}
-==Function==
+==Structure of rice Rubisco in complex with NADP(H)==
-[[http://www.uniprot.org/uniprot/RBL_ORYSJ RBL_ORYSJ]] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. [[http://www.uniprot.org/uniprot/RBS1_ORYSJ RBS1_ORYSJ]] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity).
+<StructureSection load='3axk' size='340' side='right'caption='[[3axk]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3axk]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa_Japonica_Group Oryza sativa Japonica Group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AXK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AXK FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene>, <scene name='pdbligand=NME:METHYLAMINE'>NME</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3axk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3axk OCA], [https://pdbe.org/3axk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3axk RCSB], [https://www.ebi.ac.uk/pdbsum/3axk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3axk ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/RBL_ORYSJ RBL_ORYSJ] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.
-==About this Structure==
+==See Also==
-[[3axk]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryza_sativa_japonica_group Oryza sativa japonica group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AXK OCA].
+*[[RuBisCO 3D structures|RuBisCO 3D structures]]
+__TOC__
-==Reference==
+</StructureSection>
-<ref group="xtra">PMID:022609438</ref><references group="xtra"/><references/>
+[[Category: Large Structures]]
-[[Category: Oryza sativa japonica group]]
+[[Category: Oryza sativa Japonica Group]]
-[[Category: Ribulose-bisphosphate carboxylase]]
+[[Category: Inoue T]]
-[[Category: Inoue, T.]]
+[[Category: Ishida H]]
-[[Category: Ishida, H.]]
+[[Category: Kai Y]]
-[[Category: Kai, Y.]]
+[[Category: Kogami A]]
-[[Category: Kogami, A.]]
+[[Category: Mae T]]
-[[Category: Mae, T.]]
+[[Category: Makino A]]
-[[Category: Makino, A.]]
+[[Category: Matsumura H]]
-[[Category: Matsumura, H.]]
+[[Category: Mizohata E]]
-[[Category: Mizohata, E.]]
+[[Category: Ueno T]]
-[[Category: Ueno, T.]]
+[[Category: Yokota A]]
-[[Category: Yokota, A.]]
-[[Category: Alpha/beta barrel]]
-[[Category: Lyase]]
-[[Category: Photosynthetic carbon reduction]]