3axk: Difference between revisions

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[[Image:3axk.png|left|200px]]


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==Structure of rice Rubisco in complex with NADP(H)==
The line below this paragraph, containing "STRUCTURE_3axk", creates the "Structure Box" on the page.
<StructureSection load='3axk' size='340' side='right'caption='[[3axk]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3axk]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa_Japonica_Group Oryza sativa Japonica Group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AXK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AXK FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene>, <scene name='pdbligand=NME:METHYLAMINE'>NME</scene></td></tr>
{{STRUCTURE_3axk|  PDB=3axk  |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3axk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3axk OCA], [https://pdbe.org/3axk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3axk RCSB], [https://www.ebi.ac.uk/pdbsum/3axk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3axk ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/RBL_ORYSJ RBL_ORYSJ] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.


===Structure of rice Rubisco in complex with NADP(H)===
==See Also==
 
*[[RuBisCO 3D structures|RuBisCO 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_22609438}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 22609438 is the PubMed ID number.
[[Category: Oryza sativa Japonica Group]]
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[[Category: Inoue T]]
{{ABSTRACT_PUBMED_22609438}}
[[Category: Ishida H]]
 
[[Category: Kai Y]]
==About this Structure==
[[Category: Kogami A]]
[[3axk]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryza_sativa_japonica_group Oryza sativa japonica group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AXK OCA].
[[Category: Mae T]]
 
[[Category: Makino A]]
==Reference==
[[Category: Matsumura H]]
<ref group="xtra">PMID:022609438</ref><references group="xtra"/>
[[Category: Mizohata E]]
[[Category: Oryza sativa japonica group]]
[[Category: Ueno T]]
[[Category: Ribulose-bisphosphate carboxylase]]
[[Category: Yokota A]]
[[Category: Inoue, T.]]
[[Category: Ishida, H.]]
[[Category: Kai, Y.]]
[[Category: Kogami, A.]]
[[Category: Mae, T.]]
[[Category: Makino, A.]]
[[Category: Matsumura, H.]]
[[Category: Mizohata, E.]]
[[Category: Ueno, T.]]
[[Category: Yokota, A.]]
[[Category: Alpha/beta barrel]]
[[Category: Lyase]]
[[Category: Photosynthetic carbon reduction]]

Latest revision as of 12:57, 14 February 2024

Structure of rice Rubisco in complex with NADP(H)Structure of rice Rubisco in complex with NADP(H)

Structural highlights

3axk is a 4 chain structure with sequence from Oryza sativa Japonica Group. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.9Å
Ligands:, , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

RBL_ORYSJ RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.

See Also

3axk, resolution 1.90Å

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OCA
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