2hdn: Difference between revisions

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==Trypsin-modified Elongation Factor Tu in complex with tetracycline at 2.8 Angstrom resolution==
The line below this paragraph, containing "STRUCTURE_2hdn", creates the "Structure Box" on the page.
<StructureSection load='2hdn' size='340' side='right'caption='[[2hdn]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2hdn]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HDN FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=TAC:TETRACYCLINE'>TAC</scene></td></tr>
{{STRUCTURE_2hdn| PDB=2hdn |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hdn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hdn OCA], [https://pdbe.org/2hdn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hdn RCSB], [https://www.ebi.ac.uk/pdbsum/2hdn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hdn ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/EFTU1_ECOLI EFTU1_ECOLI] This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.[HAMAP-Rule:MF_00118]  May play an important regulatory role in cell growth and in the bacterial response to nutrient deprivation.[HAMAP-Rule:MF_00118]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hd/2hdn_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hdn ConSurf].
<div style="clear:both"></div>


===Trypsin-modified Elongation Factor Tu in complex with tetracycline at 2.8 Angstrom resolution===
==See Also==
 
*[[Elongation factor 3D structures|Elongation factor 3D structures]]
 
__TOC__
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</StructureSection>
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{{ABSTRACT_PUBMED_17057344}}
 
==About this Structure==
[[2hdn]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HDN OCA].
 
==Reference==
<ref group="xtra">PMID:17057344</ref><references group="xtra"/>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Abel, K.]]
[[Category: Large Structures]]
[[Category: Aorora, A.]]
[[Category: Abel K]]
[[Category: Bergmann, E.]]
[[Category: Aorora A]]
[[Category: Heffron, S E.]]
[[Category: Bergmann E]]
[[Category: Jurnak, F.]]
[[Category: Heffron SE]]
[[Category: Mui, S.]]
[[Category: Jurnak F]]
[[Category: Complex with tetracycline]]
[[Category: Mui S]]
[[Category: Gtpase center]]
[[Category: Translation]]
[[Category: Trypsin-modified ef-tu]]

Latest revision as of 12:32, 14 February 2024

Trypsin-modified Elongation Factor Tu in complex with tetracycline at 2.8 Angstrom resolutionTrypsin-modified Elongation Factor Tu in complex with tetracycline at 2.8 Angstrom resolution

Structural highlights

2hdn is a 12 chain structure with sequence from Escherichia coli. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.8Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

EFTU1_ECOLI This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.[HAMAP-Rule:MF_00118] May play an important regulatory role in cell growth and in the bacterial response to nutrient deprivation.[HAMAP-Rule:MF_00118]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2hdn, resolution 2.80Å

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OCA
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