2gn5: Difference between revisions

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-{{Seed}}
-[[Image:2gn5.png|left|200px]]
-<!--
+==REFINED STRUCTURE OF THE GENE 5 DNA BINDING PROTEIN FROM BACTERIOPHAGE FD==
-The line below this paragraph, containing "STRUCTURE_2gn5", creates the "Structure Box" on the page.
+<StructureSection load='2gn5' size='340' side='right'caption='[[2gn5]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2gn5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_M13 Escherichia virus M13]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1gn5 1gn5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GN5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GN5 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gn5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gn5 OCA], [https://pdbe.org/2gn5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gn5 RCSB], [https://www.ebi.ac.uk/pdbsum/2gn5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gn5 ProSAT]</span></td></tr>
-{{STRUCTURE_2gn5|  PDB=2gn5  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/G5P_BPFD G5P_BPFD] Binds to DNA in a highly cooperative manner without pronounced sequence specificity. During synthesis of the single-stranded (progeny) viral DNA, prevents the conversion into the double-stranded replicative form. G5P is displaced by the capsid protein G8P during phage assembly on the inner bacterial membrane (By similarity).
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gn/2gn5_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gn5 ConSurf].
+<div style="clear:both"></div>
-===REFINED STRUCTURE OF THE GENE 5 DNA BINDING PROTEIN FROM BACTERIOPHAGE FD===
+==See Also==
+*[[Single-stranded DNA-binding protein 3D structures|Single-stranded DNA-binding protein 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_6684697}}, adds the Publication Abstract to the page
+[[Category: Escherichia virus M13]]
-(as it appears on PubMed at http://www.pubmed.gov), where 6684697 is the PubMed ID number.
+[[Category: Large Structures]]
--->
+[[Category: Brayer GD]]
-{{ABSTRACT_PUBMED_6684697}}
+[[Category: McPherson A]]
-==About this Structure==
-GN5 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_m13 Enterobacteria phage m13]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1gn5 1gn5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GN5 OCA].
-==Reference==
-<ref group="xtra">PMID:6684697</ref><references group="xtra"/>
-[[Category: Enterobacteria phage m13]]
-[[Category: Brayer, G D.]]
-[[Category: McPherson, A.]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 03:43:59 2009''