2gba: Difference between revisions

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-{{Seed}}
-[[Image:2gba.png|left|200px]]
-<!--
+==Reduced Cu(I) form at pH 4 of P52G mutant of amicyanin==
-The line below this paragraph, containing "STRUCTURE_2gba", creates the "Structure Box" on the page.
+<StructureSection load='2gba' size='340' side='right'caption='[[2gba]], [[Resolution|resolution]] 0.92&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2gba]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GBA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GBA FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 0.92&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene></td></tr>
-{{STRUCTURE_2gba|  PDB=2gba  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gba FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gba OCA], [https://pdbe.org/2gba PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gba RCSB], [https://www.ebi.ac.uk/pdbsum/2gba PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gba ProSAT]</span></td></tr>
+</table>
-===Reduced Cu(I) form at pH 4 of P52G mutant of amicyanin===
+== Function ==
+[https://www.uniprot.org/uniprot/AMCY_PARDE AMCY_PARDE] Primary acceptor of electrons from methylamine dehydrogenase. Passes those electrons on either a soluble cytochrome c or to pseudoazurin.
+== Evolutionary Conservation ==
-<!--
+[[Image:Consurf_key_small.gif|200px|right]]
-The line below this paragraph, {{ABSTRACT_PUBMED_16819827}}, adds the Publication Abstract to the page
+Check<jmol>
-(as it appears on PubMed at http://www.pubmed.gov), where 16819827 is the PubMed ID number.
+  <jmolCheckbox>
--->
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gb/2gba_consurf.spt"</scriptWhenChecked>
-{{ABSTRACT_PUBMED_16819827}}
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-==About this Structure==
+  </jmolCheckbox>
-GBA is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GBA OCA].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gba ConSurf].
+<div style="clear:both"></div>
-==Reference==
+__TOC__
-<ref group="xtra">PMID:16819827</ref><references group="xtra"/>
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Paracoccus denitrificans]]
-[[Category: Carrell, C J.]]
+[[Category: Carrell CJ]]
-[[Category: Davidson, V L.]]
+[[Category: Davidson VL]]
-[[Category: Ma, J K.]]
+[[Category: Ma JK]]
-[[Category: Mathews, F S.]]
+[[Category: Mathews FS]]
-[[Category: Beta-sandwich]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 06:17:40 2009''