2fgr: Difference between revisions

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[[Image:2fgr.png|left|200px]]


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==High resolution Xray structure of Omp32==
The line below this paragraph, containing "STRUCTURE_2fgr", creates the "Structure Box" on the page.
<StructureSection load='2fgr' size='340' side='right'caption='[[2fgr]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2fgr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Delftia_acidovorans Delftia acidovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FGR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FGR FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_2fgr|  PDB=2fgr |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fgr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fgr OCA], [https://pdbe.org/2fgr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fgr RCSB], [https://www.ebi.ac.uk/pdbsum/2fgr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fgr ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/OMP32_DELAC OMP32_DELAC]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fg/2fgr_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fgr ConSurf].
<div style="clear:both"></div>


===High resolution Xray structure of Omp32===
==See Also==
 
*[[Porin 3D structures|Porin 3D structures]]
 
__TOC__
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</StructureSection>
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(as it appears on PubMed at http://www.pubmed.gov), where 16434398 is the PubMed ID number.
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{{ABSTRACT_PUBMED_16434398}}
 
==About this Structure==
2FGR is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Delftia_acidovorans Delftia acidovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FGR OCA].
 
==Reference==
High resolution crystal structures and molecular dynamics studies reveal substrate binding in the porin Omp32., Zachariae U, Kluhspies T, De S, Engelhardt H, Zeth K, J Biol Chem. 2006 Mar 17;281(11):7413-20. Epub 2006 Jan 23. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16434398 16434398]
[[Category: Delftia acidovorans]]
[[Category: Delftia acidovorans]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Engelhardt, H.]]
[[Category: Engelhardt H]]
[[Category: Zachariae, U.]]
[[Category: Zachariae U]]
[[Category: Zeth, K.]]
[[Category: Zeth K]]
[[Category: Omp32 porin outer membrane protein]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 12:54:04 2008''

Latest revision as of 12:23, 14 February 2024

High resolution Xray structure of Omp32High resolution Xray structure of Omp32

Structural highlights

2fgr is a 2 chain structure with sequence from Delftia acidovorans. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.5Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

OMP32_DELAC

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2fgr, resolution 1.50Å

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