1zku: Difference between revisions

Latest revision as of 12:05, 14 February 2024

Fitting of the gp9 structure in the EM density of bacteriophage T4 extended tailFitting of the gp9 structure in the EM density of bacteriophage T4 extended tail

1zku, resolution 15.00Å

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OCA

[1] Kostyuchenko VA, Navruzbekov GA, Kurochkina LP, Strelkov SV, Mesyanzhinov VV, Rossmann MG. The structure of bacteriophage T4 gene product 9: the trigger for tail contraction. Structure. 1999 Oct 15;7(10):1213-22. PMID:10545330

[2] Leiman PG, Arisaka F, van Raaij MJ, Kostyuchenko VA, Aksyuk AA, Kanamaru S, Rossmann MG. Morphogenesis of the T4 tail and tail fibers. Virol J. 2010 Dec 3;7:355. doi: 10.1186/1743-422X-7-355. PMID:21129200 doi:10.1186/1743-422X-7-355

[1]

[2]

@@ Line 1: / Line 1: @@
-[[Image:1zku.gif|left|200px]]
-<!--
+==Fitting of the gp9 structure in the EM density of bacteriophage T4 extended tail==
-The line below this paragraph, containing "STRUCTURE_1zku", creates the "Structure Box" on the page.
+<SX load='1zku' size='340' side='right' viewer='molstar' caption='[[1zku]], [[Resolution|resolution]] 15.00&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1zku]] is a 18 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZKU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZKU FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 15&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene></td></tr>
-{{STRUCTURE_1zku|  PDB=1zku  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zku OCA], [https://pdbe.org/1zku PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zku RCSB], [https://www.ebi.ac.uk/pdbsum/1zku PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zku ProSAT]</span></td></tr>
+</table>
-'''Fitting of the gp9 structure in the EM density of bacteriophage T4 extended tail'''
+== Function ==
+[https://www.uniprot.org/uniprot/BP09_BPT4 BP09_BPT4] Baseplate protein that connects the long tail fibers to the baseplate and probably triggers the tail contraction after virus attachment to a host cell (PubMed:10545330). Involved in the tail assembly (PubMed:21129200).<ref>PMID:10545330</ref> <ref>PMID:21129200</ref>
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-ZKU is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZKU OCA].
+Check<jmol>
+  <jmolCheckbox>
-==Reference==
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zk/1zku_consurf.spt"</scriptWhenChecked>
-A four-dimensional structure of T4 infection., Fane BA, Nat Struct Mol Biol. 2005 Sep;12(9):739-40. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16142226 16142226]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Enterobacteria phage t4]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Single protein]]
+  </jmolCheckbox>
-[[Category: Kostyuchenko, V A.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zku ConSurf].
-[[Category: Structural protein]]
+<div style="clear:both"></div>
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 17:45:06 2008''
+== References ==
+<references/>
+__TOC__
+</SX>
+[[Category: Escherichia virus T4]]
+[[Category: Large Structures]]
+[[Category: Kostyuchenko VA]]

1zku: Difference between revisions

Latest revision as of 12:05, 14 February 2024

Fitting of the gp9 structure in the EM density of bacteriophage T4 extended tailFitting of the gp9 structure in the EM density of bacteriophage T4 extended tail

Structural highlights

Function

Evolutionary Conservation

References

Contents

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1zku: Difference between revisions

Latest revision as of 12:05, 14 February 2024

Fitting of the gp9 structure in the EM density of bacteriophage T4 extended tailFitting of the gp9 structure in the EM density of bacteriophage T4 extended tail

Structural highlights

Function

Evolutionary Conservation

References

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