1z0s: Difference between revisions

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-{{Seed}}
-[[Image:1z0s.png|left|200px]]
-<!--
+==Crystal structure of an NAD kinase from Archaeoglobus fulgidus in complex with ATP==
-The line below this paragraph, containing "STRUCTURE_1z0s", creates the "Structure Box" on the page.
+<StructureSection load='1z0s' size='340' side='right'caption='[[1z0s]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1z0s]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z0S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Z0S FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene></td></tr>
-{{STRUCTURE_1z0s|  PDB=1z0s  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1z0s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z0s OCA], [https://pdbe.org/1z0s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1z0s RCSB], [https://www.ebi.ac.uk/pdbsum/1z0s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1z0s ProSAT], [https://www.topsan.org/Proteins/BSGC/1z0s TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/NADK_ARCFU NADK_ARCFU] Involved in the regulation of the intracellular balance between NAD(H) and NADP(H), and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.<ref>PMID:16242716</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z0/1z0s_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1z0s ConSurf].
+<div style="clear:both"></div>
-===Crystal structure of an NAD kinase from Archaeoglobus fulgidus in complex with ATP===
+==See Also==
+*[[NAD kinase|NAD kinase]]
+== References ==
-<!--
+<references/>
-The line below this paragraph, {{ABSTRACT_PUBMED_16242716}}, adds the Publication Abstract to the page
+__TOC__
-(as it appears on PubMed at http://www.pubmed.gov), where 16242716 is the PubMed ID number.
+</StructureSection>
--->
-{{ABSTRACT_PUBMED_16242716}}
-==About this Structure==
-Z0S is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z0S OCA].
-==Reference==
-Crystal structures of an NAD kinase from Archaeoglobus fulgidus in complex with ATP, NAD, or NADP., Liu J, Lou Y, Yokota H, Adams PD, Kim R, Kim SH, J Mol Biol. 2005 Nov 25;354(2):289-303. Epub 2005 Sep 30. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16242716 16242716]
 [[Category: Archaeoglobus fulgidus]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Adams, P D.]]
+[[Category: Adams PD]]
-[[Category: BSGC, Berkeley Structural Genomics Center.]]
+[[Category: Kim R]]
-[[Category: Kim, R.]]
+[[Category: Kim SH]]
-[[Category: Kim, S H.]]
+[[Category: Liu J]]
-[[Category: Liu, J.]]
+[[Category: Lou Y]]
-[[Category: Lou, Y.]]
+[[Category: Yokota H]]
-[[Category: Yokota, H.]]
-[[Category: Atp]]
-[[Category: Atp-binding]]
-[[Category: Berkeley structural genomics center]]
-[[Category: Bsgc]]
-[[Category: Nad]]
-[[Category: Nad kinase]]
-[[Category: Nadp]]
-[[Category: Protein structure initiative]]
-[[Category: Psi]]
-[[Category: Structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 15:56:32 2008''