1yvr: Difference between revisions

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

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-{{Seed}}
-[[Image:1yvr.png|left|200px]]
-<!--
+==Ro autoantigen==
-The line below this paragraph, containing "STRUCTURE_1yvr", creates the "Structure Box" on the page.
+<StructureSection load='1yvr' size='340' side='right'caption='[[1yvr]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1yvr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xenopus_laevis Xenopus laevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YVR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YVR FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yvr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yvr OCA], [https://pdbe.org/1yvr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yvr RCSB], [https://www.ebi.ac.uk/pdbsum/1yvr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yvr ProSAT]</span></td></tr>
-{{STRUCTURE_1yvr|  PDB=1yvr  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/RO60_XENLA RO60_XENLA] RNA-binding protein that binds to several small cytoplasmic RNA molecules known as Y RNAs. May stabilize these RNAs from degradation.  May play roles in cilia formation and/or maintenance (By similarity).
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yv/1yvr_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yvr ConSurf].
+<div style="clear:both"></div>
-===Ro autoantigen===
+==See Also==
+*[[Nucleoprotein 3D structures|Nucleoprotein 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_15907467}}, adds the Publication Abstract to the page
+[[Category: Large Structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 15907467 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_15907467}}
-==About this Structure==
-YVR is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Xenopus_laevis Xenopus laevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YVR OCA].
-==Reference==
-Structural insights into RNA quality control: the Ro autoantigen binds misfolded RNAs via its central cavity., Stein AJ, Fuchs G, Fu C, Wolin SL, Reinisch KM, Cell. 2005 May 20;121(4):529-39. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15907467 15907467]
-[[Category: Single protein]]
 [[Category: Xenopus laevis]]
-[[Category: Fu, C.]]
+[[Category: Fu C]]
-[[Category: Fuchs, G.]]
+[[Category: Fuchs G]]
-[[Category: Reinisch, K M.]]
+[[Category: Reinisch KM]]
-[[Category: Stein, A J.]]
+[[Category: Stein AJ]]
-[[Category: Wolin, S L.]]
+[[Category: Wolin SL]]
-[[Category: Heat repeat]]
-[[Category: Midas motifs']]
-[[Category: Rossmann fold]]
-[[Category: Von willebrand factor some]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 12:46:03 2008''