1ysp: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:1ysp.gif|left|200px]]
- {{Structure
+==Crystal structure of the C-terminal domain of E. coli transcriptional regulator KdgR.==
-|PDB= 1ysp |SIZE=350|CAPTION= <scene name='initialview01'>1ysp</scene>, resolution 1.80&Aring;
+<StructureSection load='1ysp' size='340' side='right'caption='[[1ysp]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
+<table><tr><td colspan='2'>[[1ysp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YSP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YSP FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-|GENE= kdgR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01614 IclR]</span>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ysp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ysp OCA], [https://pdbe.org/1ysp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ysp RCSB], [https://www.ebi.ac.uk/pdbsum/1ysp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ysp ProSAT], [https://www.topsan.org/Proteins/MCSG/1ysp TOPSAN]</span></td></tr>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ysp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ysp OCA], [http://www.ebi.ac.uk/pdbsum/1ysp PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=1ysp RCSB]</span>
+</table>
-}}
+== Function ==
+[https://www.uniprot.org/uniprot/KDGR_ECOLI KDGR_ECOLI] Transcriptional regulator of the kdgK gene for the kdg kinase and the kdgT gene for the kdg permease.
-'''Crystal structure of the C-terminal domain of E. coli transcriptional regulator KdgR.'''
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
-==About this Structure==
+  <jmolCheckbox>
-YSP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YSP OCA].
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ys/1ysp_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ysp ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Escherichia coli]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Bochkarev, A.]]
+[[Category: Bochkarev A]]
-[[Category: Borek, D.]]
+[[Category: Borek D]]
-[[Category: Evdokimova, E.]]
+[[Category: Evdokimova E]]
-[[Category: Ezersky, A.]]
+[[Category: Ezersky A]]
-[[Category: Lunin, V V.]]
+[[Category: Joachimiak A]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Lunin VV]]
-[[Category: Savchenko, A.]]
+[[Category: Savchenko A]]
-[[Category: Skarina, T.]]
+[[Category: Skarina T]]
-[[Category: Xu, X.]]
+[[Category: Xu X]]
-[[Category: iclr]]
-[[Category: kdgr]]
-[[Category: mcsg]]
-[[Category: midwest center for structural genomic]]
-[[Category: protein structure initiative]]
-[[Category: psi]]
-[[Category: structural genomic]]
-[[Category: transcriptional regulator]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:15:56 2008''