1xg7: Difference between revisions

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{{Seed}}
[[Image:1xg7.png|left|200px]]


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==Conserved hypothetical protein Pfu-877259-001 from Pyrococcus furiosus==
The line below this paragraph, containing "STRUCTURE_1xg7", creates the "Structure Box" on the page.
<StructureSection load='1xg7' size='340' side='right'caption='[[1xg7]], [[Resolution|resolution]] 1.88&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1xg7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_DSM_3638 Pyrococcus furiosus DSM 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XG7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XG7 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.88&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xg7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xg7 OCA], [https://pdbe.org/1xg7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xg7 RCSB], [https://www.ebi.ac.uk/pdbsum/1xg7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xg7 ProSAT], [https://www.topsan.org/Proteins/SECSG/1xg7 TOPSAN]</span></td></tr>
{{STRUCTURE_1xg7|  PDB=1xg7  |  SCENE=  }}
</table>
 
== Function ==
===Conserved hypothetical protein Pfu-877259-001 from Pyrococcus furiosus===
[https://www.uniprot.org/uniprot/AGOG_PYRFU AGOG_PYRFU] DNA repair enzyme that is part of the base excision repair (BER) pathway; protects from oxidative damage by removing the major product of DNA oxidation, 8-oxoguanine (GO), from single- and double-stranded DNA substrates (By similarity).
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
1XG7 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus_dsm_3638 Pyrococcus furiosus dsm 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XG7 OCA].  
  <jmolCheckbox>
[[Category: Pyrococcus furiosus dsm 3638]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xg/1xg7_consurf.spt"</scriptWhenChecked>
[[Category: Adams, M W.W.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Chang, J.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Chang, S H.]]
  </jmolCheckbox>
[[Category: Chen, C Y.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xg7 ConSurf].
[[Category: Chen, L.]]
<div style="clear:both"></div>
[[Category: Eneh, J C.]]
__TOC__
[[Category: Habel, J.]]
</StructureSection>
[[Category: Hopkins, R C.]]
[[Category: Large Structures]]
[[Category: Horanyi, P.]]
[[Category: Pyrococcus furiosus DSM 3638]]
[[Category: II, F L.Poole.]]
[[Category: Adams MWW]]
[[Category: III, W B.Arendall.]]
[[Category: Arendall III WB]]
[[Category: Jr., F E.Jenney.]]
[[Category: Chang J]]
[[Category: Lee, D.]]
[[Category: Chang S-H]]
[[Category: Lee, H S.]]
[[Category: Chen C-Y]]
[[Category: Li, T.]]
[[Category: Chen L]]
[[Category: Lin, D.]]
[[Category: Eneh JC]]
[[Category: Liu, Z J.]]
[[Category: Habel J]]
[[Category: Richardson, D C.]]
[[Category: Hopkins RC]]
[[Category: Richardson, J S.]]
[[Category: Horanyi P]]
[[Category: Rose, J P.]]
[[Category: Jenney Jr FE]]
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
[[Category: Lee D]]
[[Category: Shah, C.]]
[[Category: Lee H-S]]
[[Category: Sugar, F J.]]
[[Category: Li T]]
[[Category: Tempel, W.]]
[[Category: Lin D]]
[[Category: Wang, B C.]]
[[Category: Liu Z-J]]
[[Category: Xu, H.]]
[[Category: Poole II FL]]
[[Category: Yang, H.]]
[[Category: Richardson DC]]
[[Category: Zhao, M.]]
[[Category: Richardson JS]]
[[Category: Zhou, W.]]
[[Category: Rose JP]]
[[Category: Conserved hypothetical protein]]
[[Category: Shah C]]
[[Category: Hyperthermophile]]
[[Category: Sugar FJ]]
[[Category: Protein structure initiative]]
[[Category: Tempel W]]
[[Category: Psi]]
[[Category: Wang B-C]]
[[Category: Pyrococcus furiosus]]
[[Category: Xu H]]
[[Category: Secsg]]
[[Category: Yang H]]
[[Category: Southeast collaboratory for structural genomic]]
[[Category: Zhao M]]
 
[[Category: Zhou W]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 13:04:36 2008''

Latest revision as of 11:50, 14 February 2024

Conserved hypothetical protein Pfu-877259-001 from Pyrococcus furiosusConserved hypothetical protein Pfu-877259-001 from Pyrococcus furiosus

Structural highlights

1xg7 is a 2 chain structure with sequence from Pyrococcus furiosus DSM 3638. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.88Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

AGOG_PYRFU DNA repair enzyme that is part of the base excision repair (BER) pathway; protects from oxidative damage by removing the major product of DNA oxidation, 8-oxoguanine (GO), from single- and double-stranded DNA substrates (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1xg7, resolution 1.88Å

Drag the structure with the mouse to rotate

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OCA
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