1uby: Difference between revisions

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{{Seed}}
[[Image:1uby.png|left|200px]]


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==STRUCTURE OF FARNESYL PYROPHOSPHATE SYNTHETASE==
The line below this paragraph, containing "STRUCTURE_1uby", creates the "Structure Box" on the page.
<StructureSection load='1uby' size='340' side='right'caption='[[1uby]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1uby]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UBY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UBY FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DMA:DIMETHYLALLYL+DIPHOSPHATE'>DMA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
{{STRUCTURE_1uby| PDB=1uby |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uby FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uby OCA], [https://pdbe.org/1uby PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uby RCSB], [https://www.ebi.ac.uk/pdbsum/1uby PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uby ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/FPPS_CHICK FPPS_CHICK] Catalyzes the sequential condensation of isopentenyl pyrophosphate with the allylic pyrophosphates, dimethylallyl pyrophosphate, and then with the resultant geranylpyrophosphate to the ultimate product farnesyl pyrophosphate.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ub/1uby_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1uby ConSurf].
<div style="clear:both"></div>


===STRUCTURE OF FARNESYL PYROPHOSPHATE SYNTHETASE===
==See Also==
 
*[[Farnesyl diphosphate synthase 3D structures|Farnesyl diphosphate synthase 3D structures]]
 
__TOC__
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</StructureSection>
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{{ABSTRACT_PUBMED_8986756}}
 
==About this Structure==
1UBY is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UBY OCA].
 
==Reference==
<ref group="xtra">PMID:8986756</ref><references group="xtra"/>
[[Category: Dimethylallyltranstransferase]]
[[Category: Gallus gallus]]
[[Category: Gallus gallus]]
[[Category: Poulter, C D.]]
[[Category: Large Structures]]
[[Category: Proteau, P.]]
[[Category: Poulter CD]]
[[Category: Sacchettini, J C.]]
[[Category: Proteau P]]
[[Category: Tarshis, L C.]]
[[Category: Sacchettini JC]]
[[Category: Cholesterol biosynthesis]]
[[Category: Tarshis LC]]
[[Category: Isoprene biosynthesis]]
[[Category: Transferase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 18:19:11 2009''

Latest revision as of 11:45, 14 February 2024

STRUCTURE OF FARNESYL PYROPHOSPHATE SYNTHETASESTRUCTURE OF FARNESYL PYROPHOSPHATE SYNTHETASE

Structural highlights

1uby is a 1 chain structure with sequence from Gallus gallus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.4Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

FPPS_CHICK Catalyzes the sequential condensation of isopentenyl pyrophosphate with the allylic pyrophosphates, dimethylallyl pyrophosphate, and then with the resultant geranylpyrophosphate to the ultimate product farnesyl pyrophosphate.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1uby, resolution 2.40Å

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